First release of nf-core/metapep
Main functionality:
- Download proteins for input type taxa from Entrez.
- Predict proteins for input type assembly or bins using Prodigal.
- Generate peptides from proteins.
- Split peptide files into chunks for parallel prediction and report stats.
- Predict epitopes for given alleles and peptides using SYFPEITHI, MHCflurry or MHCnuggets.
- Downstream visualizations between conditions (different microbiomes assemblies, bins, taxids or same input class with different weights) given within samplesheet
- Summarize workflow using MultiQC
- Relational datamodel to handle large amounts of data Tables defined within model
- Additional subworkflow to fetch possible model and peptide lengths for the prediction tools