update scar scvi-tools version to 1.4.3#11651
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Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
Zethson
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I think it would be more elegant to set |
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Right, I was also worried about that but in the end thought "whatever". I'll change it. |
Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
nictru
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May 15, 2026
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May 21, 2026
* update scar scvi-tools version Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net> * hash Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net> * hash Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net> * set torch cache Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net> --------- Signed-off-by: Lukas Heumos <lukas.heumos@posteo.net>
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Follow up to #11648
Also updates scvi-tools for scar.
Further sets required environment variables. Otherwise, scvi-tools:py3.13-cu12-1.4.3- crashes inside
torch._dynamoinitialization when run with -u : and the UID isn't in /etc/passwd.PyTorch 2.7's inductor cache-dir helper calls
getpass.getuser(), which falls through to pwd.getpwuid() and raises KeyError for any UID not present in the container's passwd file. This is the default Docker/Singularity behaviour on most institutional setups (LDAP/AD-assigned UIDs).We set the
to fix this.