Add new component: cnvkit/coverage#11714
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@nf-core-bot fix linting |
nvnieuwk
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May 20, 2026
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Some small non-breaking comments, feel free to merge once they've been fixed
| // interval file can be target or antitarget bed file. | ||
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| // alignement file can be BAM or CRAM | ||
| // in cnvkit version 0.9.13, a bedGraph (.bed.gz) file is also accepted. extract per-base coverage from BAM files once (eg. with bedtools genomecov -gb) | ||
| // interval file can be target or antitarget bed file. |
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This should be the description in the meta.yml file :)
Co-authored-by: Nicolas Vannieuwkerke <101190534+nvnieuwk@users.noreply.github.com>
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* Add new component: cnvkit/coverage * fix: update cnvkit version to 0.9.13 and add quay.io prefix * [automated] Fix code linting * Apply suggestion from @nvnieuwk Co-authored-by: Nicolas Vannieuwkerke <101190534+nvnieuwk@users.noreply.github.com> * fixed comments from reviewer - remove blank lines and move comments to meta.yml --------- Co-authored-by: aaron-de-cock <aaron.de.cock@student.howest.be> Co-authored-by: nf-core-bot <core@nf-co.re> Co-authored-by: Nicolas Vannieuwkerke <101190534+nvnieuwk@users.noreply.github.com>
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PR checklist
Add
coveragefunctionality tocnvkitCloses #11193
topic: versions- See version_topicslabelnf-core modules test <MODULE> --profile dockernf-core modules test <MODULE> --profile singularitynf-core modules test <MODULE> --profile condanf-core subworkflows test <SUBWORKFLOW> --profile dockernf-core subworkflows test <SUBWORKFLOW> --profile singularitynf-core subworkflows test <SUBWORKFLOW> --profile conda