Migrate yara/index and yara/mapper to topic channel versions#11730
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mashehu
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| output: | ||
| tuple val(meta), path("${fasta}*") , emit: index | ||
| path "versions.yml" , emit: versions | ||
| tuple val("${task.process}"), val('yara'), eval("yara_indexer --version 2>&1 | grep 'yara_indexer version' | sed 's/^.*yara_indexer version: //; s/ .*\$//'"), topic: versions, emit: versions_yara |
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| tuple val("${task.process}"), val('yara'), eval("yara_indexer --version 2>&1 | grep 'yara_indexer version' | sed 's/^.*yara_indexer version: //; s/ .*\$//'"), topic: versions, emit: versions_yara | |
| tuple val("${task.process}"), val('yara'), eval("yara_indexer --version 2>&1 | sed -n 's/.*yara_indexer version: \([^ ]*\).*/\1/p"), topic: versions, emit: versions_yara |
mashehu
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May 21, 2026
| tuple val(meta), path("*.mapped.bam.bai"), emit: bai | ||
| path "versions.yml" , emit: versions | ||
| tuple val("${task.process}"), val('yara'), eval("yara_mapper --version 2>&1 | grep 'yara_mapper version' | sed 's/^.*yara_mapper version: //; s/ .*\$//'"), topic: versions, emit: versions_yara | ||
| tuple val("${task.process}"), val('samtools'), eval("samtools --version 2>&1 | head -n1 | sed 's/^.*samtools //'"), topic: versions, emit: versions_samtools |
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| tuple val("${task.process}"), val('samtools'), eval("samtools --version 2>&1 | head -n1 | sed 's/^.*samtools //'"), topic: versions, emit: versions_samtools | |
| tuple val("${task.process}"), val('samtools'), eval("samtools version | sed '1!d;s/.* //'"), topic: versions, emit: versions_samtools |
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PR checklist
topic: versions- See version_topicslabelnf-core modules test yara/index --profile dockernf-core modules test yara/mapper --profile docker