From 4bc68e931a6d4ccced4c9c84207df24792752d08 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Mon, 22 Apr 2024 11:22:49 +0200 Subject: [PATCH 1/2] feat(subworkflows): rename utils_nfvalidation_plugin to utils_utils_validate_params --- .../nf-core/utils_nfvalidation_plugin/tests/tags.yml | 2 -- .../main.nf | 2 +- .../meta.yml | 2 +- .../tests/main.nf.test | 8 ++++---- .../tests/nextflow_schema.json | 0 .../nf-core/utils_utils_validate_params/tests/tags.yml | 2 ++ 6 files changed, 8 insertions(+), 8 deletions(-) delete mode 100644 subworkflows/nf-core/utils_nfvalidation_plugin/tests/tags.yml rename subworkflows/nf-core/{utils_nfvalidation_plugin => utils_utils_validate_params}/main.nf (98%) rename subworkflows/nf-core/{utils_nfvalidation_plugin => utils_utils_validate_params}/meta.yml (97%) rename subworkflows/nf-core/{utils_nfvalidation_plugin => utils_utils_validate_params}/tests/main.nf.test (97%) rename subworkflows/nf-core/{utils_nfvalidation_plugin => utils_utils_validate_params}/tests/nextflow_schema.json (100%) create mode 100644 subworkflows/nf-core/utils_utils_validate_params/tests/tags.yml diff --git a/subworkflows/nf-core/utils_nfvalidation_plugin/tests/tags.yml b/subworkflows/nf-core/utils_nfvalidation_plugin/tests/tags.yml deleted file mode 100644 index 60b1cfff49b..00000000000 --- a/subworkflows/nf-core/utils_nfvalidation_plugin/tests/tags.yml +++ /dev/null @@ -1,2 +0,0 @@ -subworkflows/utils_nfvalidation_plugin: - - subworkflows/nf-core/utils_nfvalidation_plugin/** diff --git a/subworkflows/nf-core/utils_nfvalidation_plugin/main.nf b/subworkflows/nf-core/utils_utils_validate_params/main.nf similarity index 98% rename from subworkflows/nf-core/utils_nfvalidation_plugin/main.nf rename to subworkflows/nf-core/utils_utils_validate_params/main.nf index 2585b65d1b0..7096983a1de 100644 --- a/subworkflows/nf-core/utils_nfvalidation_plugin/main.nf +++ b/subworkflows/nf-core/utils_utils_validate_params/main.nf @@ -18,7 +18,7 @@ include { validateParameters } from 'plugin/nf-validation' ======================================================================================== */ -workflow UTILS_NFVALIDATION_PLUGIN { +workflow UTILS_VALIDATE_PARAMS { take: print_help // boolean: print help diff --git a/subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml b/subworkflows/nf-core/utils_utils_validate_params/meta.yml similarity index 97% rename from subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml rename to subworkflows/nf-core/utils_utils_validate_params/meta.yml index 3d4a6b04f57..09ad644771e 100644 --- a/subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml +++ b/subworkflows/nf-core/utils_utils_validate_params/meta.yml @@ -1,5 +1,5 @@ # yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json -name: "UTILS_NFVALIDATION_PLUGIN" +name: "UTILS_VALIDATE_PARAMS" description: Use nf-validation to initiate and validate a pipeline keywords: - utility diff --git a/subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test b/subworkflows/nf-core/utils_utils_validate_params/tests/main.nf.test similarity index 97% rename from subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test rename to subworkflows/nf-core/utils_utils_validate_params/tests/main.nf.test index 5784a33f2f5..f192bed77bb 100644 --- a/subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test +++ b/subworkflows/nf-core/utils_utils_validate_params/tests/main.nf.test @@ -1,14 +1,14 @@ nextflow_workflow { - name "Test Workflow UTILS_NFVALIDATION_PLUGIN" + name "Test Workflow UTILS_VALIDATE_PARAMS" script "../main.nf" - workflow "UTILS_NFVALIDATION_PLUGIN" + workflow "UTILS_VALIDATE_PARAMS" tag "subworkflows" tag "subworkflows_nfcore" tag "plugin/nf-validation" tag "'plugin/nf-validation'" - tag "utils_nfvalidation_plugin" - tag "subworkflows/utils_nfvalidation_plugin" + tag "utils_validate_params" + tag "subworkflows/utils_validate_params" test("Should run nothing") { diff --git a/subworkflows/nf-core/utils_nfvalidation_plugin/tests/nextflow_schema.json b/subworkflows/nf-core/utils_utils_validate_params/tests/nextflow_schema.json similarity index 100% rename from subworkflows/nf-core/utils_nfvalidation_plugin/tests/nextflow_schema.json rename to subworkflows/nf-core/utils_utils_validate_params/tests/nextflow_schema.json diff --git a/subworkflows/nf-core/utils_utils_validate_params/tests/tags.yml b/subworkflows/nf-core/utils_utils_validate_params/tests/tags.yml new file mode 100644 index 00000000000..e6800a33595 --- /dev/null +++ b/subworkflows/nf-core/utils_utils_validate_params/tests/tags.yml @@ -0,0 +1,2 @@ +subworkflows/utils_validate_params: + - subworkflows/nf-core/utils_validate_params/** From 708ceaa6a26915e23750a0d13d058be907db6b5f Mon Sep 17 00:00:00 2001 From: maxulysse Date: Mon, 22 Apr 2024 17:53:30 +0200 Subject: [PATCH 2/2] feat(typo): fix name --- .../main.nf | 0 .../meta.yml | 0 .../tests/main.nf.test | 0 .../tests/nextflow_schema.json | 0 .../tests/tags.yml | 0 5 files changed, 0 insertions(+), 0 deletions(-) rename subworkflows/nf-core/{utils_utils_validate_params => utils_validate_params}/main.nf (100%) rename subworkflows/nf-core/{utils_utils_validate_params => utils_validate_params}/meta.yml (100%) rename subworkflows/nf-core/{utils_utils_validate_params => utils_validate_params}/tests/main.nf.test (100%) rename subworkflows/nf-core/{utils_utils_validate_params => utils_validate_params}/tests/nextflow_schema.json (100%) rename subworkflows/nf-core/{utils_utils_validate_params => utils_validate_params}/tests/tags.yml (100%) diff --git a/subworkflows/nf-core/utils_utils_validate_params/main.nf b/subworkflows/nf-core/utils_validate_params/main.nf similarity index 100% rename from subworkflows/nf-core/utils_utils_validate_params/main.nf rename to subworkflows/nf-core/utils_validate_params/main.nf diff --git a/subworkflows/nf-core/utils_utils_validate_params/meta.yml b/subworkflows/nf-core/utils_validate_params/meta.yml similarity index 100% rename from subworkflows/nf-core/utils_utils_validate_params/meta.yml rename to subworkflows/nf-core/utils_validate_params/meta.yml diff --git a/subworkflows/nf-core/utils_utils_validate_params/tests/main.nf.test b/subworkflows/nf-core/utils_validate_params/tests/main.nf.test similarity index 100% rename from subworkflows/nf-core/utils_utils_validate_params/tests/main.nf.test rename to subworkflows/nf-core/utils_validate_params/tests/main.nf.test diff --git a/subworkflows/nf-core/utils_utils_validate_params/tests/nextflow_schema.json b/subworkflows/nf-core/utils_validate_params/tests/nextflow_schema.json similarity index 100% rename from subworkflows/nf-core/utils_utils_validate_params/tests/nextflow_schema.json rename to subworkflows/nf-core/utils_validate_params/tests/nextflow_schema.json diff --git a/subworkflows/nf-core/utils_utils_validate_params/tests/tags.yml b/subworkflows/nf-core/utils_validate_params/tests/tags.yml similarity index 100% rename from subworkflows/nf-core/utils_utils_validate_params/tests/tags.yml rename to subworkflows/nf-core/utils_validate_params/tests/tags.yml