diff --git a/CHANGELOG.md b/CHANGELOG.md index b6856aab..35bb59c2 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,13 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [2.0.1] - 2021-11-29 + +### Bug fix + +* The `UCSC_BEDGRAPHTOBIGWIG` process now uses the `ucsc-bedgraphtobigwig` container +* The full-size and minimal AWS tests have successfully finished after changing to the `ucsc-bedgraphtobigwig` container + ## [2.0.0] - 2021-11-26 ### Major enhancements diff --git a/conf/base.config b/conf/base.config index a89a563e..e4510c84 100644 --- a/conf/base.config +++ b/conf/base.config @@ -23,12 +23,6 @@ process { errorStrategy = { task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish' } maxRetries = 1 maxErrors = '-1' - withName:UCSC_BEDGRAPHTOBIGWIG { - if ({ task.exitStatus in [255] }) { errorStrategy = 'ignore' } - } - withName:UCSC_BED12TOBIGBED { - if ({ task.exitStatus in [255] }) { errorStrategy = 'ignore' } - } withLabel:process_low { cpus = { check_max( 2 * task.attempt, 'cpus' ) } diff --git a/modules/local/ucsc_bedgraphtobigwig.nf b/modules/local/ucsc_bedgraphtobigwig.nf index a1d7f5c2..28622203 100644 --- a/modules/local/ucsc_bedgraphtobigwig.nf +++ b/modules/local/ucsc_bedgraphtobigwig.nf @@ -15,9 +15,9 @@ process UCSC_BEDGRAPHTOBIGWIG { conda (params.enable_conda ? "bioconda::ucsc-bedgraphtobigwig=377" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/ucsc-bedtobigbed:377--h446ed27_1" + container "https://depot.galaxyproject.org/singularity/ucsc-bedgraphtobigwig:377--h446ed27_1" } else { - container "quay.io/biocontainers/ucsc-bedtobigbed:377--h446ed27_1" + container "quay.io/biocontainers/ucsc-bedgraphtobigwig:377--h446ed27_1" } input: diff --git a/nextflow.config b/nextflow.config index 716be970..76de0fdc 100644 --- a/nextflow.config +++ b/nextflow.config @@ -215,7 +215,7 @@ manifest { description = 'A pipeline to demultiplex, QC and map Nanopore data' mainScript = 'main.nf' nextflowVersion = '!>=21.04.0' - version = '2.0.0' + version = '2.0.1' } // Function to ensure that resource requirements don't go beyond