2.2.0 - Dogmatix

What's Changed

• typo by @EmelineFavreau in #562
• adds missinf citations for bwameme by @jemten in #563
• Few fixes by @ramprasadn in #570
• Add parameters to skip snv calling and repeat analysis by @ramprasadn in #571
• Add a new paramter to skip sv calling by @ramprasadn in #572
• Turn off workflows irrelevant for WES analysis by @ramprasadn in #573
• Refactor by @ramprasadn in #574
• update peddy module by @ramprasadn in #576
• Refactor citations by @ramprasadn in #577
• Fix WES error by @ramprasadn in #578
• Bcftools roh logic update by @ramprasadn in #579
• adds channels to meme mt align by @jemten in #582
• fix: added publishDir mode in raredisease.config by @irliampa in #584
• Reorder SNV annotation subworkflow to improve performance by @ramprasadn in #585
• SV calling error in WES samples by @ramprasadn in #586
• Deepvariant update v1.6.1 by @ramprasadn in #587
• Add an option to pass extra resources to vcfanno by @ramprasadn in #588
• Add feature to pass vcf.gz files as an additional resource for vcfanno by @ramprasadn in #589
• makes 0 an allowed value for sex by @jemten in #595
• Update docs by @ramprasadn in #594
• Change lane type from number to string by @ramprasadn in #597
• Add option to supply bed file with PAR regions & enable haploid analysis for males by @ramprasadn in #598
• bwamem2 for mt by @ramprasadn in #600
• Updating Sentieon DNAscope ml-model by @asp8200 in #601
• Resolve issues that cropped up when aligner and mt_aligner were different by @ramprasadn in #605
• Add option to generate csi index for managed variants by @ramprasadn in #606
• Change platform description and update vcf2cytosure conditional by @ramprasadn in #607
• Updatevep from v110-112 by @ramprasadn in #609
• Release 2.2.0 by @ramprasadn in #580

New Contributors

• @EmelineFavreau made their first contribution in #562
• @irliampa made their first contribution in #584

Full Changelog: 2.1.0...2.2.0