From 33184a3c1dab016033b595b40e6658e9cc3de07a Mon Sep 17 00:00:00 2001
From: Annick Renevey <annick.renevey@hasta.scilifelab.se>
Date: Tue, 11 Jan 2022 09:56:42 +0100
Subject: [PATCH] changed time and cpus allocated to starfusion don download
 and modification to fusioncatcher output

---
 conf/modules.config                          | 2 ++
 modules/local/fusioncatcher/download/main.nf | 4 ++--
 modules/local/starfusion/download/main.nf    | 2 +-
 3 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/conf/modules.config b/conf/modules.config
index 93f36471..29e3f2d3 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -67,6 +67,8 @@ params {
         }
         'starfusion_download' {
             ext.args                = ""
+            cpus                    = 20
+            time                    = 120.h
         }
     }
 }
diff --git a/modules/local/fusioncatcher/download/main.nf b/modules/local/fusioncatcher/download/main.nf
index a37b24c1..56190c3a 100644
--- a/modules/local/fusioncatcher/download/main.nf
+++ b/modules/local/fusioncatcher/download/main.nf
@@ -13,8 +13,8 @@ process FUSIONCATCHER_DOWNLOAD {
     }
 
     output:
-    path "human_${human_version}/*"    , emit: reference
-    path "versions.yml"                , emit: versions
+    path "*"                , emit: reference
+    path "versions.yml"     , emit: versions
 
     script:
 
diff --git a/modules/local/starfusion/download/main.nf b/modules/local/starfusion/download/main.nf
index c98ece5d..47a6a7c8 100644
--- a/modules/local/starfusion/download/main.nf
+++ b/modules/local/starfusion/download/main.nf
@@ -1,6 +1,6 @@
 process STARFUSION_DOWNLOAD {
     tag 'star-fusion'
-    label 'process_low'
+    label 'process_high'
     publishDir "${params.genomes_base}",
         mode: params.publishDir_mode,
         saveAs: { filename -> filename.equals('versions.yml') ? null : filename }