Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Important! Template update for nf-core/tools v2.11 #1141

Merged
merged 5 commits into from
Dec 22, 2023
Merged

Important! Template update for nf-core/tools v2.11 #1141

merged 5 commits into from
Dec 22, 2023

Conversation

nf-core-bot
Copy link
Member

Version 2.11 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.11 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v2.11 release page.

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 22, 2023 •
edited
Loading

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 2e72110

+| ✅ 146 tests passed       |+
#| ❔   6 tests were ignored |#
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in WorkflowRnaseq.groovy: Optionally add in-text citation tools to this list.

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/email_template.html
  • files_unchanged - File ignored due to lint config: assets/email_template.txt
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/rnaseq/rnaseq/.github/workflows/awstest.yml
  • multiqc_config - multiqc_config

✅ Tests passed:

Run details

  • nf-core/tools version 2.11.1
  • Run at 2023-12-22 16:41:59

@pinin4fjords pinin4fjords merged commit 878a3e6 into dev Dec 22, 2023
29 checks passed
@pinin4fjords pinin4fjords deleted the nf-core-template-merge-2.11 branch December 22, 2023 17:01
@drpatelh drpatelh added this to the 3.13.3 milestone Jan 3, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@pinin4fjords pinin4fjords pinin4fjords approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
3.14.0
Development

Successfully merging this pull request may close these issues.
3 participants
@nf-core-bot @pinin4fjords @drpatelh