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README.md

nf-core/scrnaseq

Pipeline for processing of 10xGenomics single cell rnaseq data.

Build Status Nextflow

install with bioconda Docker

Introduction

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.

Documentation

The nf-core/scrnaseq pipeline comes with documentation about the pipeline, found in the docs/ directory:

  1. Installation
  2. Pipeline configuration
  3. Running the pipeline
  4. Output and how to interpret the results
  5. Troubleshooting

Credits

nf-core/scrnaseq was originally written by Peter J. Bailey.

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