From 62e50344032db13afa0b40614c2287364c9adda0 Mon Sep 17 00:00:00 2001
From: f641l <florian.heyl@dkfz-heidelberg.de>
Date: Thu, 21 May 2026 08:33:59 +0200
Subject: [PATCH] minor change in spatialxe.nf

---
 workflows/spatialxe.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/workflows/spatialxe.nf b/workflows/spatialxe.nf
index 169968e..be6b7cf 100644
--- a/workflows/spatialxe.nf
+++ b/workflows/spatialxe.nf
@@ -205,12 +205,12 @@ workflow SPATIALXE {
             error("❌ Xenium bundle does not exist: ${bundle}")
         }
 
-        def missing_required = bundle_required_files.findAll { !file("${bundle_path}/${it}").exists() }
+        def missing_required = bundle_required_files.findAll { check -> !file("${bundle_path}/${check}").exists() }
         if (missing_required) {
             error("❌ Missing required file(s) in xenium bundle '${bundle}': ${missing_required}")
         }
 
-        def missing_optional = bundle_optional_files.findAll { !file("${bundle_path}/${it}").exists() }
+        def missing_optional = bundle_optional_files.findAll { check -> !file("${bundle_path}/${check}").exists() }
         if (missing_optional) {
             log.warn("⚠️ Missing optional file(s) in xenium bundle '${bundle}': ${missing_optional}")
         }