From 589ca663df2fe241c346fd711cf17847d5fc098d Mon Sep 17 00:00:00 2001 From: Remi-Andre Olsen Date: Mon, 19 Mar 2018 10:41:03 +0100 Subject: [PATCH] implemented suggestions by @sven1103 --- nf_core/lint.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/nf_core/lint.py b/nf_core/lint.py index 309a5b9a8..44ad3673d 100644 --- a/nf_core/lint.py +++ b/nf_core/lint.py @@ -104,7 +104,7 @@ def pf(file_path): files = [files] if any([os.path.isfile(pf(f)) for f in files]): self.passed.append((1, "File found: {}".format(files))) - self.files.append(files) + self.files.extend(files) else: self.failed.append((1, "File not found: {}".format(files))) @@ -114,7 +114,7 @@ def pf(file_path): files = [files] if any([os.path.isfile(pf(f)) for f in files]): self.passed.append((1, "File found: {}".format(files))) - self.files.append(files) + self.files.extend(files) else: self.warned.append((1, "File not found: {}".format(files))) @@ -270,7 +270,7 @@ def check_readme(self): nf_config_version = self.config.get('params.nf_required_version').strip('\'"') try: assert nf_badge_version == nf_config_version - except (AssertionError, KeyError) as e: + except (AssertionError, KeyError): self.failed.append((6, "README Nextflow minimum version badge does not match config. Badge: '{}', Config: '{}'".format(nf_badge_version, nf_config_version))) else: self.passed.append((6, "README Nextflow minimum version badge matched config. Badge: '{}', Config: '{}'".format(nf_badge_version, nf_config_version)))