From c708353832d56f8c57e73961476cc208ff325f1d Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Wed, 21 Feb 2024 10:53:29 +0000 Subject: [PATCH 1/5] [automated] Update CHANGELOG.md --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 950322d87..6b4b1ac70 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,8 @@ ### Template +- more update ([#2786](https://github.com/nf-core/tools/pull/2786)) + ### Linting ### Components From f138c4406f1d1d91e39ef4bfaa8cce0f5e11c69c Mon Sep 17 00:00:00 2001 From: maxulysse Date: Wed, 21 Feb 2024 11:50:42 +0100 Subject: [PATCH 2/5] add another jinja --- nf_core/pipeline-template/workflows/pipeline.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/pipeline-template/workflows/pipeline.nf b/nf_core/pipeline-template/workflows/pipeline.nf index 68adbaa32..7cd070301 100644 --- a/nf_core/pipeline-template/workflows/pipeline.nf +++ b/nf_core/pipeline-template/workflows/pipeline.nf @@ -40,7 +40,7 @@ workflow {{ short_name|upper }} { // Collate and save software versions // softwareVersionsToYAML(ch_versions) - .collectFile(storeDir: "${params.outdir}/pipeline_info", name: 'nf_core_pipeline_software_mqc_versions.yml', sort: true, newLine: true) + .collectFile(storeDir: "${params.outdir}/pipeline_info", name: 'nf_core_{{ short_name }}_software_mqc_versions.yml', sort: true, newLine: true) .set { ch_collated_versions } // From 0c5abb0d04a85c23f72f70867528e98f95b8bff6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Matthias=20H=C3=B6rtenhuber?= Date: Wed, 21 Feb 2024 13:42:31 +0100 Subject: [PATCH 3/5] Update CHANGELOG.md --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 6b4b1ac70..4bf660d4c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,7 +4,7 @@ ### Template -- more update ([#2786](https://github.com/nf-core/tools/pull/2786)) +- Rename Nextflow tower badge, fix pipeline name and white space errors in template ([#2785](https://github.com/nf-core/tools/pull/2785)) and ([#2786](https://github.com/nf-core/tools/pull/2786)) ### Linting From 8d2b8fc1d16993970eaf2fab478189259db3195d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Matthias=20H=C3=B6rtenhuber?= Date: Wed, 21 Feb 2024 13:42:48 +0100 Subject: [PATCH 4/5] Update CHANGELOG.md --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 4bf660d4c..64137fed7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,7 +4,7 @@ ### Template -- Rename Nextflow tower badge, fix pipeline name and white space errors in template ([#2785](https://github.com/nf-core/tools/pull/2785)) and ([#2786](https://github.com/nf-core/tools/pull/2786)) +- Rename Nextflow tower badge, fix pipeline name and white space errors in template ([#2785](https://github.com/nf-core/tools/pull/2785)) and ([#2786](https://github.com/nf-core/tools/pull/2786)) ### Linting From bb3e33680fb7b14440057039028b6f646550868c Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Wed, 21 Feb 2024 12:47:08 +0000 Subject: [PATCH 5/5] [automated] Fix code linting --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 64137fed7..887f41b6a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,7 +4,7 @@ ### Template -- Rename Nextflow tower badge, fix pipeline name and white space errors in template ([#2785](https://github.com/nf-core/tools/pull/2785)) and ([#2786](https://github.com/nf-core/tools/pull/2786)) +- Rename Nextflow tower badge, fix pipeline name and white space errors in template ([#2785](https://github.com/nf-core/tools/pull/2785)) and ([#2786](https://github.com/nf-core/tools/pull/2786)) ### Linting