diff --git a/.github/rich-codex.yml b/.github/rich-codex.yml index e7dab327fa..df5ddbbcb1 100644 --- a/.github/rich-codex.yml +++ b/.github/rich-codex.yml @@ -46,7 +46,7 @@ outputs: title: nextflow run img_paths: - public/images/contributing/creating_with_nf_core/nextflow_run_no_outdir.svg - - command: git clone https://github.com/nf-core/modules.git --depth 1 && cd modules && nf-core modules create fastqc --author @janedoe --label process_low --meta + - command: git clone https://github.com/nf-core/modules.git --depth 1 && cd modules && nf-core modules create fastqc --author @janedoe --label process_low --meta --force fake_command: nf-core modules create fastqc --author @janedoe --label process_low --meta img_paths: - public/images/contributing/modules/nf-core-modules-create.svg @@ -97,7 +97,7 @@ outputs: - public/images/tools/nf-core-schema-validate.svg - command: | cd tmp/nf-core-nextbigthing && \ - sed '25,30d' nextflow_schema.json > nextflow_schema.json.tmpsed '25,30d' nextflow_schema.json > nextflow_schema.json.tmp && \ + sed '25,30d' nextflow_schema.json > nextflow_schema.json.tmp && \ mv nextflow_schema.json.tmp nextflow_schema.json && \ nf-core schema build --no-prompts timeout: 10 @@ -108,10 +108,6 @@ outputs: fake_command: nf-core schema lint img_paths: - public/images/tools/nf-core-schema-lint.svg - - command: cd tmp/nf-core-nextbigthing && nf-core bump-version 1.1 - fake_command: nf-core bump-version 1.1 - img_paths: - - public/images/tools/nf-core-bump-version.svg - command: | cd tmp/nf-core-nextbigthing && \ git config --global user.email "nf-core_bot@example.com" && \ @@ -121,6 +117,10 @@ outputs: fake_command: nf-core sync img_paths: - public/images/tools/nf-core-sync.svg + - command: cd tmp/nf-core-nextbigthing && nf-core bump-version 1.1 + fake_command: nf-core bump-version 1.1 + img_paths: + - public/images/tools/nf-core-bump-version.svg - command: cd tmp && nf-core create-logo nextbigthing fake_command: nf-core create-logo nextbigthing img_paths: @@ -169,8 +169,7 @@ outputs: - public/images/tools/nf-core-modules-create.svg - command: | cd tmp/modules && \ - sed 's/1.13a/1.10/g' modules/multiqc/main.nf > modules/multiqc/main.nf.tmp && \ - mv modules/multiqc/main.nf.tmp modules/multiqc/main.nf && \ + sed -i 's/1.13a/1.10/g' modules/multiqc/main.nf && \ nf-core modules lint multiqc fake_command: nf-core modules lint multiqc img_paths: @@ -182,8 +181,8 @@ outputs: fake_command: nf-core modules test fastqc --no-prompts img_paths: - public/images/tools/nf-core-modules-test.svg - - command: cd tmp/modules && nf-core modules bump-version fastqc - fake_command: nf-core modules bump-version fastqc + - command: cd tmp/modules && nf-core modules bump-versions fastqc + fake_command: nf-core modules bump-versions fastqc img_paths: - public/images/tools/nf-core-modules-bump-version.svg - command: cd tmp/nf-core-nextbigthing && nf-core subworkflows list remote