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version: '0.0.0'
name: 'Test tool'
functions:
-
nglName: "testing"
arg0: './command.sh'
arg1:
atype: 'readset'
filetype: "fq1"
can_gzip: true
additional:
-
atype: 'flag'
name: 'verbose'
def: true
-
atype: 'option'
name: 'testing'
allowed:
- 'one'
- 'two'
- 'three'
-
atype: 'flag'
name: 'alternative'
def: true
when-true: "--alternative=yes"
-
atype: 'flag'
name: 'alternative2'
when-true:
- "--alternative2=yes"
- "--other"
-
nglName: "testing2"
arg0: './command.sh'
arg1:
atype: 'readset'
filetype: "fq1"
can_gzip: true
init:
init_cmd: './check.sh'
init_args:
- "one"
- "two"