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NG-meta-profiler

NG-meta-profiler is a collection of predefined pipelines for processing shotgun metagenomes.

  1. human-gut.ngl for human gut samples
  2. marine.ngl for marine samples
  3. mouse-gut.ngl for mouse gut samples
  4. dog-gut.ngl for dog gut samples
  5. pig-gut.ngl for pig gut samples

These are predefined, but users are encouraged to adapt them to their specific needs.

INSTALL

  1. install ngless
  2. install ng-meta-profiler by downloading the appropriate pipeline from github: https://github.com/ngless-toolkit/ng-meta-profiler

USAGE

To use the profiler, select the appropriate script (e.g., human-gut.ngl for human gut samples), put all the FastQ files from the same sample in the same directory (INPUT-DIRECTORY) with the extension .fq.gz or fastq.gz and run:

ngless human-gut.ngl INPUT-DIRECTORY OUTPUT-DIRECTORY
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