Join GitHub today
GitHub is home to over 40 million developers working together to host and review code, manage projects, and build software together.Sign up
Broken pipe with samtools sort and multiple selects #92
Current master dc769d7 fails with:
and a sufficiently large
I tried reproducing this with the
I managed to reproduce it locally with a 13MB bam file generated with:
While trying to workaround the problem above I ran into a different issue but the error above may be related to the same problem.