/2017-ucsc-metagenomics

Workshop materials for shotgun metagenomics
  1. Jupyter Notebook 89.0%
  2. HTML 8.6%
  3. Python 1.5%
  4. Other 0.9%
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Latest commit 5adbcb1 Jul 17, 2017 @ctb ctb committed on GitHub Merge pull request #5 from ngs-docs/revert-4-master 
Revert "Update index.md"
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_static corrected images for jetstream Apr 22, 2017
_templates upgrade site Apr 19, 2017
aws retool => UCSC Apr 19, 2017
files update with tsne Apr 23, 2017
jetstream add annot Apr 22, 2017
.gitignore added to gitignore Sep 24, 2015
DATA.md retool => UCSC Apr 19, 2017
INSTALL.md retool => UCSC Apr 19, 2017
Makefile add md support, fix clean Feb 17, 2016
README.md corrected spelling Apr 23, 2017
assemble.rst Merge branch 'master' into metabat Apr 23, 2017
binning.rst some upd Apr 24, 2017
circos-build.tar.gz added circos build Oct 13, 2016
circos_tutorial.rst Update circos_tutorial.rst Apr 23, 2017
conf.py upgrade site Apr 19, 2017
day2-install.rst some upd Apr 24, 2017
gather-counts.py Update gather-counts.py Oct 12, 2016
index.md Revert "Update index.md" Jul 17, 2017
kmer_trimming.rst update paths for jetstream Apr 20, 2017
mapping.rst Merge branch 'master' into metabat Apr 23, 2017
prokka_tutorial.rst updated questions section Apr 23, 2017
quality.rst include ssh tunnel instructions Apr 23, 2017
requirements.txt upgrade site Apr 19, 2017
salmon_tutorial.rst updated path to quant directory Apr 23, 2017
slice.rst spellfix Oct 15, 2016
sourmash.md update the things Apr 23, 2017
test.html updated circos training information Oct 13, 2016
toc.rst add workflow Apr 23, 2017
welcome.pptx update the things Apr 22, 2017
welcome.rst add annot Apr 22, 2017
whatnext.md many small changes Apr 23, 2017
workflow.md add workflow Apr 23, 2017

README.md