diff --git a/analyzing_nanopore_data.md b/analyzing_nanopore_data.md index c835225f..28d96883 100644 --- a/analyzing_nanopore_data.md +++ b/analyzing_nanopore_data.md @@ -34,7 +34,8 @@ cd sudo mkdir /home/linuxbrew sudo chown $USER:$USER /home/linuxbrew git clone https://github.com/Linuxbrew/brew.git /home/linuxbrew/.linuxbrew -export PATH=/home/linuxbrew/.linuxbrew/bin:$PATH +echo 'export PATH=/home/linuxbrew/.linuxbrew/bin:$PATH' >> ~/.bashrc +source ~/.bashrc brew tap homebrew/science ``` @@ -55,7 +56,8 @@ Install [prokka](http://www.vicbioinformatics.com/software.prokka.shtml): ``` cd git clone https://github.com/tseemann/prokka.git -export PATH=$PWD/prokka/bin:$PATH +echo 'export PATH=$PWD/prokka/bin:$PATH' >> ~/.bashrc +source ~/.bashrc prokka --setupdb prokka --version ``` @@ -99,7 +101,8 @@ cd mummer-3.9.4alpha ./configure make sudo make install -export LD_LIBRARY_PATH="/usr/local/lib" +echo 'export LD_LIBRARY_PATH="/usr/local/lib"' >> ~/.bashrc +source ~/.bashrc ``` gnuplot v4 for [reasons](https://sourceforge.net/p/mummer/mailman/message/34939032/)