ngs-docs/ngs-notebooks

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root authored June 19, 2013

lib	trial by BLAST	June 02, 2012
.gitignore	trial by BLAST	June 02, 2012
README.txt	first commit	June 01, 2012
genes.gff	data for istvantheterrible	June 09, 2012
ngs-00-update-notebooks.ipynb	removed now-unnecessary run/reboot	June 06, 2012
ngs-01-install-dropbox.ipynb	dropbox install	June 04, 2012
ngs-02-install-screed.ipynb	updated for day3 python and screed	June 06, 2012
ngs-03-install-khmer.ipynb	initial velvet stuff	June 07, 2012
ngs-10-blast.ipynb	updated	June 05, 2012
ngs-11-python-and-graphing.ipynb	cleared output	June 06, 2012
ngs-12-python-rundown.ipynb	python intro notebook	June 06, 2012
ngs-31-python-and-short-reads.ipynb	updated with dros download & indexing instructions	June 07, 2012
ngs-41-velvet-genome-assembly.ipynb	initial velvet stuff	June 07, 2012
ngs-42-oases-mRNAseq-assembly.ipynb	more nbs	June 07, 2012
ngs-43-trinity-mRNAseq-assembly.ipynb	some trinity fixes	June 07, 2012
ngs-44-kmer-distributions.ipynb	updated kmer distributions	June 09, 2012
ngs-51-gimme-tools.ipynb	renamed ngs-gimme-notebook to ngs-51-gimme-tools	June 12, 2012
ngs-5x-digital-normalization.ipynb	diginorm tutorial	June 12, 2012
ngs-5x-kmer-abundance-distributions-2013.ipynb	rename	June 19, 2013
ngs-61-intro-to-dicts.ipynb	dict tutorials	June 15, 2012
ngs-62-screed-database-as-dict.ipynb	dict tutorials	June 15, 2012
ngs-70-hmp-diginorm.ipynb	Added snapshot info	June 14, 2012
ngs-71-hmp-partition.ipynb	added Adina tutorials	June 12, 2012
reads.bed	data for istvantheterrible	June 09, 2012
run.sh	updated	June 05, 2012

README.txt

IPython notebooks for the MSU NGS summer course.

See:

http://bioinformatics.msu.edu/ngs-summer-course-2012

for more information.

C. Titus Brown, ctb@msu.edu

public ngs-docs/ngs-notebooks forked from ctb/ngs-notebooks

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