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latest commit 57edaf519a
root authored June 19, 2013
Octocat-spinner-32 lib trial by BLAST June 02, 2012
Octocat-spinner-32 .gitignore trial by BLAST June 02, 2012
Octocat-spinner-32 README.txt first commit June 01, 2012
Octocat-spinner-32 genes.gff data for istvantheterrible June 09, 2012
Octocat-spinner-32 ngs-00-update-notebooks.ipynb removed now-unnecessary run/reboot June 06, 2012
Octocat-spinner-32 ngs-01-install-dropbox.ipynb dropbox install June 04, 2012
Octocat-spinner-32 ngs-02-install-screed.ipynb updated for day3 python and screed June 06, 2012
Octocat-spinner-32 ngs-03-install-khmer.ipynb initial velvet stuff June 07, 2012
Octocat-spinner-32 ngs-10-blast.ipynb updated June 05, 2012
Octocat-spinner-32 ngs-11-python-and-graphing.ipynb cleared output June 06, 2012
Octocat-spinner-32 ngs-12-python-rundown.ipynb python intro notebook June 06, 2012
Octocat-spinner-32 ngs-31-python-and-short-reads.ipynb updated with dros download & indexing instructions June 07, 2012
Octocat-spinner-32 ngs-41-velvet-genome-assembly.ipynb initial velvet stuff June 07, 2012
Octocat-spinner-32 ngs-42-oases-mRNAseq-assembly.ipynb more nbs June 07, 2012
Octocat-spinner-32 ngs-43-trinity-mRNAseq-assembly.ipynb some trinity fixes June 07, 2012
Octocat-spinner-32 ngs-44-kmer-distributions.ipynb updated kmer distributions June 09, 2012
Octocat-spinner-32 ngs-51-gimme-tools.ipynb renamed ngs-gimme-notebook to ngs-51-gimme-tools June 12, 2012
Octocat-spinner-32 ngs-5x-digital-normalization.ipynb diginorm tutorial June 12, 2012
Octocat-spinner-32 ngs-5x-kmer-abundance-distributions-2013.ipynb rename June 19, 2013
Octocat-spinner-32 ngs-61-intro-to-dicts.ipynb dict tutorials June 15, 2012
Octocat-spinner-32 ngs-62-screed-database-as-dict.ipynb dict tutorials June 15, 2012
Octocat-spinner-32 ngs-70-hmp-diginorm.ipynb Added snapshot info June 14, 2012
Octocat-spinner-32 ngs-71-hmp-partition.ipynb added Adina tutorials June 12, 2012
Octocat-spinner-32 reads.bed data for istvantheterrible June 09, 2012
Octocat-spinner-32 run.sh updated June 05, 2012
README.txt
IPython notebooks for the MSU NGS summer course.

See:

http://bioinformatics.msu.edu/ngs-summer-course-2012

for more information.

C. Titus Brown, ctb@msu.edu
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