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lib trial by BLAST Jun 2, 2012
.gitignore trial by BLAST Jun 2, 2012
README.txt first commit Jun 2, 2012
genes.gff
ngs-00-update-notebooks.ipynb removed now-unnecessary run/reboot Jun 6, 2012
ngs-01-install-dropbox.ipynb dropbox install Jun 4, 2012
ngs-02-install-screed.ipynb updated for day3 python and screed Jun 6, 2012
ngs-03-install-khmer.ipynb initial velvet stuff Jun 7, 2012
ngs-10-blast.ipynb
ngs-11-python-and-graphing.ipynb
ngs-12-python-rundown.ipynb python intro notebook Jun 6, 2012
ngs-31-python-and-short-reads.ipynb updated with dros download & indexing instructions Jun 7, 2012
ngs-41-velvet-genome-assembly.ipynb
ngs-42-oases-mRNAseq-assembly.ipynb
ngs-43-trinity-mRNAseq-assembly.ipynb
ngs-44-kmer-distributions.ipynb updated kmer distributions Jun 9, 2012
ngs-51-gimme-tools.ipynb renamed ngs-gimme-notebook to ngs-51-gimme-tools Jun 12, 2012
ngs-5x-digital-normalization.ipynb diginorm tutorial Jun 12, 2012
ngs-5x-kmer-abundance-distributions-2013.ipynb
ngs-61-intro-to-dicts.ipynb
ngs-62-screed-database-as-dict.ipynb
ngs-70-hmp-diginorm.ipynb
ngs-71-hmp-partition.ipynb
reads.bed data for istvantheterrible Jun 9, 2012
run.sh updated Jun 5, 2012

README.txt

IPython notebooks for the MSU NGS summer course.

See:

http://bioinformatics.msu.edu/ngs-summer-course-2012

for more information.

C. Titus Brown, ctb@msu.edu