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Pinned repositories


    Whole Genome Simulator for Next-Generation Sequencing

    C 45 26

  2. TMAP

    Torrent Mapping Alignment Program

    C 14

  3. pbgzip

    Parallel Block GZIP

    Assembly 28 2

  4. fulcrumgenomics/fgbio

    Tools for working with genomic and high throughput sequencing data.

    Scala 76 10

  5. fulcrumgenomics/dagr

    A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs

    Scala 33 6

  6. snakeparse

    Making Snakemake workflows into full-fledged command line tools since 1999.

    Python 23 2

750 contributions in the last year

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Contribution activity

October 2018

Created a pull request in samtools/htsjdk that received 9 comments

BinaryCodec.readBytesOrFewer fails if no data is requested AND no date is available in the underlying input stream

I ran into this bug when writing an empty string as the last element into a byte buffer (ex binaryCodec.writeString("", true, false)) and then tryi…

+12 −8 9 comments

Created an issue in samtools/htsjdk that received 7 comments

Adopt automatic code style formatting

@tfenne @lbergelson @jacarey @pshapiro4broad From recent memory, I have seen most pull requests have style issues (mine included) with anywhere bet…


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