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Pinned repositories

  1. bfx-examples

    Bioinformatics Example Repository

    Scala

  2. DWGSIM

    Whole Genome Simulator for Next-Generation Sequencing

    C 33 22

  3. TMAP

    Torrent Mapping Alignment Program

    C 15

  4. BFAST

    BFAST: the Blat-like Fast Accurate Search Tool

    C 9 4

  5. pbgzip

    Parallel Block GZIP

    Assembly 24 2

  6. basespace-invaders

    A collection of tools to work with Illumina's basespace

    Python 8 4

802 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

August 2017

Created a pull request in fulcrumgenomics/fgstr that received 2 comments

Adding some more documentation

Created an issue in fulcrumgenomics/fgbio that received 2 comments

SamOrder.Coordinate is not stable based on read name

If two reads have the same coordinate, Picard orders the reads by: read name flags mapq mate coordinate insert size whereas fgbio orders the read…

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