Package libraries and setup scripts for R, Python, Julia, and Atom (editor)
On Ubuntu (Linux) run as root by adding prefix
Rscript -e rpkgs.R(or in an R session)
- Python v3.4+:
python3 pypkgs.py(on Ubuntu 14.04, use
- Python v2.7+:
python2 pypkgs.py(on Ubuntu 14.04, use
N.B., when install R packages, permissions issues can most easily be avoided
by running the install script in an interactive R session started from the
terminal (in particular, use of
R CMD BATCH is not recommended).
Rscript seems to work well (as of 15 June 2016), but reliability has not yet
been completely verified.
The following information is current as of 27 August 2016 and should be taken into account when following the recommended install procedure above.
On macOS, the "system Python" is Python 2.6.6 and is symlinked as
python. After installation of newer versions of Python (e.g., via Homebrew), Python 2.7.X is symlinked as
python2, and Python 3.5.X is symlinked as
On Ubuntu Trusty Tahr (14.04), the "system Python" is Python 3.4.3 and is symlinked as
python3. After installing newer Python versions (via Felix Krull's "deadsnakes" PPA), Python 3.5.X is symlinked as
python3.5, while Python 2.7.X is symlinked as
Set up Jupyter kernels for R, Julia, Python, Torch, etc., manually using the instructions in the file
jupyter.md. Note that Jupyter kernels for R, Python3, and Julia are set up in the individual language-specific install scripts. The file
jupyter.mdis updated semi-regularly to facilitate installation of other kernels (e.g., Python2, Torch).
Download and install the pythonic Xonsh shell by following these instructions for Linux or for macOS. Note that xonsh and gitsome are automatically installed for Python v.3.4+ in the
© 2016-2018 Nima Hejazi
The contents of this repository are distributed under the MIT license. See file
LICENSE for details.