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@fhcrc
  • A curated subset of 16S rRNA sequences from NCBI

    Python Updated Oct 17, 2017
  • Reformat and condense multiple sequence alignments to highlight variability

    Python 2 3 Updated Oct 16, 2017
  • Extends the scons build tool for reproducible workflows in bioinformatics.

    Python 13 2 Updated Oct 9, 2017
  • A command line wrapper and Dockerfile for dada2

    Shell Updated Sep 28, 2017
  • Python utilities for manipulation of biological sequences

    Python 7 Updated Sep 15, 2017
  • batch export of org-mode files from the command line

    Emacs Lisp 25 5 Updated Sep 15, 2017
  • A python project template with bells and whistles

    Python 2 Updated Aug 19, 2017
  • Docker image for generating plots and reports with R

    Shell Updated Aug 8, 2017
  • Python library and CLI for UW Groups API

    Python Updated Aug 7, 2017
  • A blog built using emacs org-mode and Pelican

    HTML 2 Updated Jul 11, 2017
  • Enforce barcode match stringency and read quality in demultiplexed MiSeq reads

    Python 1 Updated Jul 2, 2017
  • Simplest possible fasta parser

    Python 1 Updated Jul 1, 2017
  • A test repo for docker hub

    Updated Jun 21, 2017
  • Use python's argparse module in shell scripts

    Shell 41 10 Updated Jun 19, 2017
  • My emacs configuration

    Emacs Lisp 14 6 Updated Jun 19, 2017
  • A whitepaper describing software development best practices for the clinical laboratory

    TeX 1 Updated May 27, 2017
  • Use MoinMoin as a CMS for document control in the clinical laboratory

    Python Updated May 11, 2017
  • Tools for NGS sequence analysis and bacterial classification

    UnrealScript Updated Apr 10, 2017
  • ggbiplot

    Forked from vqv/ggbiplot

    A biplot based on ggplot2

    R 74 Updated Oct 17, 2016
  • Wraps swarm to perform pooled dereplication

    Python 3 Updated Sep 26, 2016
  • A wrapper for virtualenv, pip, and wheel

    Python 2 1 Updated Feb 25, 2016
  • a demo for building static html reports with Jinja2 and Bootstrap

    Python Updated Jan 26, 2016
  • Install and manage R packages in a python virtualenv.

    R 2 Updated Nov 16, 2015
  • (yet another) org-mode blogging framework

    Emacs Lisp Updated Nov 5, 2015
  • R package providing a command line optional and positional argument parser.

    R 3 Updated Oct 4, 2015
  • Code and data for delta check simulation paper

    Shell Updated Feb 11, 2014
  • Phylogenetic placement and downstream analysis

    OCaml 10 Updated Nov 15, 2013
  • scons template for reproducible research

    Shell Updated Oct 21, 2013
  • A suite of utilities for converting to and working with CSV, the king of tabular file formats.

    Prolog 1 405 Updated Aug 29, 2013
  • deenurp

    Forked from fhcrc/deenurp

    De-novo selection of reference sequences

    Python 3 Updated Feb 4, 2013