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Merge pull request #1 from tgvaughan/patch-1

Fixed broken bibtex file references.
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nicfel committed Mar 25, 2019
2 parents 3620c8d + a70635a commit 1f45863097fbe4d4180cef369febe5743c1d0426
Showing with 3 additions and 3 deletions.
  1. +3 −3 README.md
@@ -27,7 +27,7 @@ The webpage [https://darrenjw.wordpress.com/2013/09/29/parallel-tempering-and-me

### BEAST2 - Bayesian Evolutionary Analysis Sampling Trees 2

BEAST2 ([http://www.beast2.org](http://www.beast2.org)) is a free software package for Bayesian evolutionary analysis of molecular sequences using MCMC and strictly oriented toward inference using rooted, time-measured phylogenetic trees. This tutorial is written for BEAST v{{ page.beastversion }} {% cite BEAST2book2014 --file CoupledMCMC/master-refs %}.
BEAST2 ([http://www.beast2.org](http://www.beast2.org)) is a free software package for Bayesian evolutionary analysis of molecular sequences using MCMC and strictly oriented toward inference using rooted, time-measured phylogenetic trees. This tutorial is written for BEAST v{{ page.beastversion }} {% cite BEAST2book2014 --file CoupledMCMC-Tutorial/master-refs %}.


### BEAUti2 - Bayesian Evolutionary Analysis Utility
@@ -47,7 +47,7 @@ TreeAnnotator is provided as a part of the BEAST2 package so you do not need to

# Practical: Setting up an analysis with coupled MCMC

{% cite Mueller348391 --file CoupledMCMC/master-refs.bib %}
{% cite Mueller348391 --file CoupledMCMC-Tutorial/master-refs.bib %}



@@ -266,7 +266,7 @@ Next, open the log files of all chains which had a higher iteration and remove t

- Blog post explaining coupled MCMC [https://darrenjw.wordpress.com/2013/09/29/parallel-tempering-and-metropolis-coupled-mcmc/](https://darrenjw.wordpress.com/2013/09/29/parallel-tempering-and-metropolis-coupled-mcmc/)
- Coupled MCMC source code: [https://github.com/nicfel/CoupledMCMC](https://github.com/nicfel/CoupledMCMC)
- [Bayesian Evolutionary Analysis with BEAST 2](http://www.beast2.org/book.html) {% cite BEAST2book2014 --file CoupledMCMC/master-refs.bib %}
- [Bayesian Evolutionary Analysis with BEAST 2](http://www.beast2.org/book.html) {% cite BEAST2book2014 --file CoupledMCMC-Tutorial/master-refs.bib %}
- BEAST 2 website and documentation: [http://www.beast2.org/](http://www.beast2.org/)
- Join the BEAST user discussion: [http://groups.google.com/group/beast-users](http://groups.google.com/group/beast-users)

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