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Highlights

  • Arctic Code Vault Contributor

Popular repositories

  1. gtdb_to_taxdump

    Convert GTDB taxonomy to NCBI taxdump format

    Python 17 4

  2. MFEprimer_linux

    A fast thermodynamics-based program for checking PCR primer specificity (setup.py: linux install)

    Python 3

  3. CLdb

    Create a local pan-genome CRISPR database

    Perl 2 1

  4. pushmsg

    IPython magic function to send notifications with Pushbullet

    Python 2 1

  5. MGSIM

    Metagenome read simulation of multiple synthetic communities

    Python 2

  6. traitar3

    From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)

    Python 2

209 contributions in the last year

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Contribution activity

February 2021

Created 1 commit in 1 repository
Created 1 repository

Created a pull request in MrOlm/inStrain that received 2 comments

added per-group processing for inStrain compare

I quickly tried changing the code to allow for single-group processing by inStrain compare. While the group processing time is uneven, such as this…

+109 −14 • 2 comments

Created an issue in markfairbanks/tidytable that received 8 comments

Error in `:=`

The following function works when initialized in an R session, but generates the error below when used within a package (custom, internal R package) …

8 comments
Opened 12 other issues in 11 repositories
MrOlm/inStrain
2 open
tada-alg/TADA
1 open
ericgoolsby/Rphylopars
1 closed
snakemake/snakemake
1 open
tyjo/coptr
1 closed
jeroen/sys
1 open
SegataLab/panphlan
1 open
mschubert/clustermq
1 open
soedinglab/MMseqs2
1 closed
markfairbanks/tidytable
1 closed
MrOlm/drep
1 open

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