Zika iSNV detection on nanopore
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.gitignore
BC01.freqs.txt
BC01.trimmed.sorted.bam
BC01.trimmed.sorted.bam.bai
BC01.variants.0.03.txt
BC01.variants.freqs.txt
BC02.freqs.txt
BC02.trimmed.sorted.bam
BC02.trimmed.sorted.bam.bai
BC02.variants.0.03.txt
BC02.variants.freqs.txt
BC03.freqs.txt
BC03.trimmed.sorted.bam
BC03.trimmed.sorted.bam.bai
BC03.variants.0.03.txt
BC03.variants.freqs.txt
LICENSE
README
README.md
analysis.Rmd
analysis.html
analysis.nb.html
analysis.pdf
expectedpositions.txt
illumina_variants.tsv
minion_glm_classifier_snps.tsv
minion_variants.tsv
minion_variants_3pc_0.7strandaf.tsv
minion_variants_3pc_all.tsv
minion_wt_frequencies.tsv
process_data.sh
roc_curve.pdf
setup_environment.sh
strain_frequencies.txt

README.md

zika-isnv

Zika iSNV detection on nanopore