Added options to enable GeneMarkS2, Diamond, RNAmmer
As per the pull request #25 and the issue #20, command-line options to enable GeneMarkS2, Diamond, RNAmmer have been added.
See FAQ for more details.
--aligner STR Aligner to use [ghostx(=default)|blastp|diamond] --use_genemarks2 STR Use GeneMarkS2 to predict CDS instead of MGA. [auto|bact|arch] --use_rnammer STR Use RNAmmer to predict rRNA instead of Barrnap. [bact|arch]
Note that GeneMarkS2, Diamond, RNAmmer are not bundled in the software package. If you want to use them, please install them by yourself.
Thank @AaronRuben for the PR for GeneMarkS2!