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Feb 22, 2021
Bumped to v1.2.13

@nigyta nigyta released this Feb 4, 2021

dfast_file_downloader.py updated (http download from NCBI)
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  • 1.2.6
  • 100d57a
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  • 1.2.6
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@nigyta nigyta released this Feb 10, 2020

Added options to enable GeneMarkS2, Diamond, RNAmmer
As per the pull request #25 and the issue #20, command-line options to enable GeneMarkS2, Diamond, RNAmmer have been added.
See FAQ for more details.

  --aligner STR         Aligner to use [ghostx(=default)|blastp|diamond]
  --use_genemarks2 STR  Use GeneMarkS2 to predict CDS instead of MGA. [auto|bact|arch]
  --use_rnammer STR     Use RNAmmer to predict rRNA instead of Barrnap. [bact|arch]

Note that GeneMarkS2, Diamond, RNAmmer are not bundled in the software package. If you want to use them, please install them by yourself.

Thank @AaronRuben for the PR for GeneMarkS2!

Assets 2
Nov 11, 2019
Bumped to 1.2.5
Nov 1, 2019
Bumped to 1.2.4
- Automatically index DB files when index files do not exist.
- Added "--no_indexing" option to file downloader script
- Updated MGA binary for MacOS catalina