From 8731708c3119f51e67b33e49422494a00f4dee7a Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Mon, 17 Jun 2024 10:51:40 -0400 Subject: [PATCH] DOC: 24.0.0 changelog --- CHANGES.rst | 57 +++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 57 insertions(+) diff --git a/CHANGES.rst b/CHANGES.rst index e8574d2c..410c9f89 100644 --- a/CHANGES.rst +++ b/CHANGES.rst @@ -1,3 +1,60 @@ +24.0.0 (June 17, 2024) +====================== + +New feature release in the 24.0.x series. + +This release is an incremental improvement on 23.2.x, with some +fixes for bugs discovered in the updated workflow. + +New features include separation of HTML reports by session for subjects +with many BOLD runs, a new ``--fs-no-resume`` option to improve interoperability +with less typical FreeSurfer directories, such as those generated by longitudinal +FreeSurfer or FastSurfer, and adoption of DatasetLinks and BIDS-URIs, to follow +the recommendations of recent versions of BIDS. + +With thanks to Dimitri Papadopoulos, Basile Pinsard, Celine Provins, Taylor Salo +and Wang Hao-Ting for their contributions! + +* FIX: Add "double" type to allowed DisplacementFieldTransform (#3287) +* FIX: Require recent templateflow, select correct aparc dseg.tsv (#3256) +* FIX: Ensure proper templates are retrieved with sloppy (#3251) +* FIX: Delete summary from functional report when separated by sessions (#3223) +* FIX: Support lists in bids filter file containing ``null`` or ``*`` (#3215) +* FIX: Re-enable anat fasttrack for dataset without t1w (#3202) +* ENH: Use BIDSURI in init_ds_boldmask_wf (#3297) +* ENH: Add templateflow to DatasetLinks (#3267) +* ENH: Track proximal sources of functional GIFTIs (#3263) +* ENH: Support named derivative paths (#3264) +* ENH: Track Sources for standard-space outputs (#3262) +* ENH: Add --fs-no-resume option to reuse existing FreeSurfer outputs without resuming (#3142) +* ENH: Use BIDS URIs to track Sources in sidecars (#3255) +* ENH: Ignore unselected subjects in BIDSLayoutIndexer (#3236) +* ENH: Add metadata for motion parameters (#3245) +* ENH: Separate anatomical and functional reports per session for densely sampled dataset (#3191) +* ENH: Leverage T2w if available for BOLD -> anat coregistration (#3208) +* RF: Fix ITK warp conversion to nitransforms format (#3300) +* RF: Load report assembler from nireports (#3177) +* DOC: Clarify ``--dvars-spike-threshold`` uses standardized DVARS (#3205) +* TST: Update test to reflect new report generation behavior (#3210) +* STY: Manual conversions to f-strings (#3241) +* STY: Apply ruff/pyupgrade rule UP031 (#3280) +* STY: Lint and style check full repository (#3221) +* STY: Adopt ruff for linting and formatting (#3206) +* MNT: Pin libitk 5.3 and note dependencies (#3298) +* MNT: Upgrade ruff pre-commit, add fixing checks (#3283) +* MNT: Complete transition from flake8/black to ruff (#3279) +* MNT: Apply Repo-Review suggestions (#3194) +* MNT: Verbatim copy of Apache license 2.0 (#3259) +* MNT: Bump cryptography from 41.0.7 to 42.0.4 (#3234) +* MNT: Drop copyright year, unused dunder fields (#3247) +* MNT: Update environment pins (#3226) +* MNT: Bump codecov/codecov-action from 3 to 4 (#3219) +* DOCKER: Restore mincinfo binary (#3249) +* CI: Move to new circle machine tags (#3248) +* CI: Avoid ruff warning (#3244) +* CI: Pass ruff tests (#3243) + + 23.2.3 (May 20, 2024) ===================== Bug fix release in the 23.2.x series.