diff --git a/nibabies/cli/parser.py b/nibabies/cli/parser.py index 06e57a76..199e16b3 100644 --- a/nibabies/cli/parser.py +++ b/nibabies/cli/parser.py @@ -474,12 +474,12 @@ def _bids_filter(value): g_other.add_argument( "--output-layout", action="store", - default="legacy", + default="bids", choices=("bids", "legacy"), - help="Organization of outputs. legacy (default) creates derivative " - "datasets as subdirectories of outputs. bids places NiBabies derivatives " + help="Organization of outputs. bids (default) places NiBabies derivatives " "directly in the output directory, and defaults to placing FreeSurfer " - "derivatives in /sourcedata/freesurfer.", + "derivatives in /sourcedata/freesurfer. legacy creates derivative " + "datasets as subdirectories of outputs." ) g_other.add_argument( "-w",