From 5d3d389dcedb48bb3dfa7e56c1bdd53658f077d5 Mon Sep 17 00:00:00 2001 From: Mathias Goncalves Date: Fri, 8 Oct 2021 16:46:42 -0400 Subject: [PATCH] ENH: Make `bids` default output layout [skip ci] --- nibabies/cli/parser.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/nibabies/cli/parser.py b/nibabies/cli/parser.py index 06e57a76..199e16b3 100644 --- a/nibabies/cli/parser.py +++ b/nibabies/cli/parser.py @@ -474,12 +474,12 @@ def _bids_filter(value): g_other.add_argument( "--output-layout", action="store", - default="legacy", + default="bids", choices=("bids", "legacy"), - help="Organization of outputs. legacy (default) creates derivative " - "datasets as subdirectories of outputs. bids places NiBabies derivatives " + help="Organization of outputs. bids (default) places NiBabies derivatives " "directly in the output directory, and defaults to placing FreeSurfer " - "derivatives in /sourcedata/freesurfer.", + "derivatives in /sourcedata/freesurfer. legacy creates derivative " + "datasets as subdirectories of outputs." ) g_other.add_argument( "-w",