From bf6c58429388e0473a3133b7a079619ede326968 Mon Sep 17 00:00:00 2001 From: Mathias Goncalves Date: Fri, 20 Dec 2024 07:40:23 -0500 Subject: [PATCH 1/2] FIX: Make intermediate transforms always available --- nibabies/workflows/anatomical/registration.py | 1 + 1 file changed, 1 insertion(+) diff --git a/nibabies/workflows/anatomical/registration.py b/nibabies/workflows/anatomical/registration.py index 77be3371..a405c010 100644 --- a/nibabies/workflows/anatomical/registration.py +++ b/nibabies/workflows/anatomical/registration.py @@ -405,6 +405,7 @@ def init_concat_registrations_wf( ), name='intermed_xfms', iterfield=['std'], + overwrite=True, # otherwise, cache hits but not guarantee files are present on reruns run_without_submitting=True, ) From 4ab54213d47d07a9ab26fc0a23d96983b73553a8 Mon Sep 17 00:00:00 2001 From: Mathias Goncalves Date: Fri, 20 Dec 2024 07:42:24 -0500 Subject: [PATCH 2/2] FIX: Nitransforms H5 ingestion --- pyproject.toml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 5c5966c8..3802b8e7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,7 +24,8 @@ dependencies = [ "nipype >= 1.8.5", "nireports >= 23.2.0", "nitime", - "nitransforms >= 24.1.1", +# "nitransforms >= 24.1.1", + "nitransforms @ git+https://github.com/nipy/nitransforms.git@enh/itk-displacement-field", "niworkflows >= 1.12.1", "numpy >= 1.21.0", "packaging",