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ENH: add ref_mask arguments to parser #31

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Merged
merged 1 commit into from
Jun 26, 2025
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ENH: add ref_mask arguments to parser #31

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7 changes: 7 additions & 0 deletions petprep/cli/parser.py
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Original file line number Diff line number Diff line change
Expand Up @@ -554,6 +554,13 @@ def _bids_filter(value, parser):
help='Segmentation method to use.',
)

g_refmask = parser.add_argument_group('Options for reference mask generation')
g_refmask.add_argument(
'--ref-mask-name',
choices=['cerebellum'],
help='Predefined reference regions',
)

g_pvc = parser.add_argument_group('Options for partial volume correction')
parser.add_argument('--pvc-tool', choices=['petpvc', 'petsurfer'], help='Tool to use for partial volume correction')
g_pvc.add_argument('--pvc-method', action='store', help='PVC method identifier')
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