diff --git a/smriprep/workflows/anatomical.py b/smriprep/workflows/anatomical.py index b15e8a4099..08a2ea7a5c 100644 --- a/smriprep/workflows/anatomical.py +++ b/smriprep/workflows/anatomical.py @@ -161,7 +161,7 @@ def init_anat_preproc_wf(skull_strip_template, fs_spaces, template, debug, **Subworkflows** * :py:func:`~smriprep.workflows.anatomical.init_skullstrip_ants_wf` - * :py:func:`~smriprep.workflows.anatomical.init_surface_recon_wf` + * :py:func:`~smriprep.workflows.surfaces.init_surface_recon_wf` """ diff --git a/smriprep/workflows/surfaces.py b/smriprep/workflows/surfaces.py index 55d899e759..a2eb82f100 100644 --- a/smriprep/workflows/surfaces.py +++ b/smriprep/workflows/surfaces.py @@ -84,7 +84,7 @@ def init_surface_recon_wf(omp_nthreads, hires, name='surface_recon_wf'): The final phase resumes reconstruction, using the T2w image to assist in finding the pial surface, if available. - See :py:func:`~smriprep.workflows.anatomical.init_autorecon_resume_wf` for details. + See :py:func:`~smriprep.workflows.surfaces.init_autorecon_resume_wf` for details. Memory annotations for FreeSurfer are based off `their documentation @@ -98,7 +98,7 @@ def init_surface_recon_wf(omp_nthreads, hires, name='surface_recon_wf'): :graph2use: orig :simple_form: yes - from smriprep.workflows.anatomical import init_surface_recon_wf + from smriprep.workflows.surfaces import init_surface_recon_wf wf = init_surface_recon_wf(omp_nthreads=1, hires=True) **Parameters** @@ -151,8 +151,8 @@ def init_surface_recon_wf(omp_nthreads, hires, name='surface_recon_wf'): **Subworkflows** - * :py:func:`~smriprep.workflows.anatomical.init_autorecon_resume_wf` - * :py:func:`~smriprep.workflows.anatomical.init_gifti_surface_wf` + * :py:func:`~smriprep.workflows.surfaces.init_autorecon_resume_wf` + * :py:func:`~smriprep.workflows.surfaces.init_gifti_surface_wf` """ workflow = Workflow(name=name) @@ -296,7 +296,7 @@ def init_autorecon_resume_wf(omp_nthreads, name='autorecon_resume_wf'): :graph2use: orig :simple_form: yes - from smriprep.workflows.anatomical import init_autorecon_resume_wf + from smriprep.workflows.surfaces import init_autorecon_resume_wf wf = init_autorecon_resume_wf(omp_nthreads=1) **Inputs** @@ -405,7 +405,7 @@ def init_gifti_surface_wf(name='gifti_surface_wf'): :graph2use: orig :simple_form: yes - from smriprep.workflows.anatomical import init_gifti_surface_wf + from smriprep.workflows.surfaces import init_gifti_surface_wf wf = init_gifti_surface_wf() **Inputs** @@ -478,7 +478,7 @@ def init_segs_to_native_wf(name='segs_to_native', segmentation='aseg'): :graph2use: orig :simple_form: yes - from smriprep.workflows.anatomical import init_segs_to_native_wf + from smriprep.workflows.surfaces import init_segs_to_native_wf wf = init_segs_to_native_wf()