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Cleaned PR for Visualization Modules to Assess the quality of Registration Qualitatively. #1606

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535efaa
Crated a new branch with clean history for the affine registration wo…
parichit Jul 31, 2018
802f3c4
Pasted the stable (latest) code from the PR 1581 in the image.py file.
parichit Jul 31, 2018
df43e44
Pasted the stable (latest) code from PR 1581 into the test_align.py f…
parichit Jul 31, 2018
b6ace1c
Pasted the stable code from PR1581 to imaffine.py file.
parichit Jul 31, 2018
36717ba
Fixed the PEP8 issues.
parichit Jul 31, 2018
468a9a3
Pasted the stable code from PR 1581 for the command line wrapper into…
parichit Jul 31, 2018
c6a6264
Changed the function call in the 'RIGID' transform to invoke 'center …
parichit Aug 2, 2018
095cb7f
added a new line at the end of file in dipy_align_affine command to f…
parichit Aug 2, 2018
cd4191d
Fixed the PEP8 space complaints in the align.py file.
parichit Aug 2, 2018
d55dfb2
Updated the parameter documentation in the ImageRegistrationFlow() cl…
parichit Aug 7, 2018
e5c0979
Decreased the decimal precision to 1 decimal places (in checking the …
parichit Aug 8, 2018
fdb3105
1) Updated the parameter documentation for optimal parameters and sim…
parichit Aug 13, 2018
328c22f
removed the redundant print statement.
parichit Aug 13, 2018
246ab27
Pasted the code in image.py file from PR1598.
parichit Jul 31, 2018
6d91a5c
Pasted the clean and stable code in align.py from PR1598.
parichit Jul 31, 2018
bfb6897
Pasted the clean and stable code in test_align.py from PR1598.
parichit Jul 31, 2018
f66751b
Pasted the clean and stable code in dipy_apply_affine wrapper from PR…
parichit Jul 31, 2018
67e9422
Pasted the clean and stable code in vis_registration.py from PR1595.
parichit Jul 31, 2018
f32b7b6
Pasted the clean code for overlay_slices function from PR1595.
parichit Jul 31, 2018
50231a9
Pasted the stable code in core.py from PR1595.
parichit Jul 31, 2018
71c3ccb
Fixed the PEP8 warning in the vis_registration.py
parichit Jul 31, 2018
db7b84a
Pasted the stable code in dipy_vis_register.py wrapper from PR1595.
parichit Jul 31, 2018
2b0697f
Fixed the PEP8 warnings in the dipy_vis_register.py file.
parichit Jul 31, 2018
1e1bd66
1) Fixed the PEP8 formatting issue in the dipy_align_affine and dipy_…
parichit Aug 2, 2018
79f47bd
1) Renamed the command line wrapper for the syn_registration.
parichit Aug 2, 2018
ff38243
1) Renamed the ApplyTransformFlow to ApplyAffineFlow to distinguish i…
parichit Aug 2, 2018
0a98c9a
Added the test case.
parichit Aug 3, 2018
ee5a449
temp_commit
parichit Aug 3, 2018
81e07f9
Fixed the PEP8 warning in the test_align.py for the test_apply_transf…
parichit Aug 7, 2018
f6feb26
Changed the name of the function to test_apply_affine_transform() and…
parichit Aug 8, 2018
adefc45
Fixed the output file creation error due to output directory prependi…
parichit Aug 13, 2018
73fc149
Fixed the testing of color range values in the numpy array by calling…
parichit Aug 13, 2018
b764262
Updated the parameter documentation for the ApplyAffineFlow() class.
parichit Aug 13, 2018
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Updated the parameter documentation for the ApplyAffineFlow() class.

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parichit committed Aug 13, 2018
commit b76426290bed559aac9838d4ef318602b9bdb1f1
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@@ -532,7 +532,7 @@ def run(self, static_image_file, moving_image_files, affine_matrix_file,
Path of the static image file.
moving_image_files : string
Location of moving image(s). It can be a single image or a
Path of the moving image(s). It can be a single image or a
folder containing multiple images.
affine_matrix_file : string
@@ -542,9 +542,9 @@ def run(self, static_image_file, moving_image_files, affine_matrix_file,
Directory to save the transformed files (default '').
out_file : string, optional
Name of the transformed file. If no name is given then a
suffix 'transformed' will be appended to the name of the
original input file (default 'transformed.nii.gz').
Name of the transformed file (default 'transformed.nii.gz').
It is recommended to use the flag --mix-names to
prevent the output files from being overwritten.
"""

io = self.get_io_iterator()
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