napari-nibabel

A napari i/o plugin for neuroimaging formats (via nibabel/pydicom). Note that this project is in an early prototype stage and is missing many features.

Currently, it should be able to open the following formats in Napari:

NIFTI1, NIFTI2, ANALYZE, Philips PAR/REC, MINC1, MINC2, AFNI BRIK/HEAD and MGH/MGZ.

The following features are still pending:

• use affine information to orient and size the volumes properly
• use voxel dimensions so that anisotropic volumes will be displayed properly
• center the napari display at the coordinate origin upon opening
• add DICOM support
• add ECAT format support (PET)
• add file writing support

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Installation

You can install napari-nibabel via pip:

pip install napari-nibabel

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD 3-Clause license, "napari-nibabel" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.