From 607d8c782ce2f06063d03c2dce513610456fbb9a Mon Sep 17 00:00:00 2001 From: Olivia Stanley Date: Thu, 28 Apr 2016 18:19:32 -0400 Subject: [PATCH] fixed to allow for varied write permissions --- nipype/pipeline/plugins/sgegraph.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nipype/pipeline/plugins/sgegraph.py b/nipype/pipeline/plugins/sgegraph.py index c8d97a682f..edb7d3be62 100644 --- a/nipype/pipeline/plugins/sgegraph.py +++ b/nipype/pipeline/plugins/sgegraph.py @@ -136,7 +136,7 @@ def make_job_name(jobnumber, nodeslist): if self._qsub_args.count('-o ') == 0: stdoutFile = '-o {outFile}'.format( outFile=batchscriptoutfile) - full_line = '{jobNm}=$(qsub {outFileOption} {errFileOption} {extraQSubArgs} {dependantIndex} -N {jobNm} {batchscript} | awk \'{{print $3}}\')\n'.format( + full_line = '{jobNm}=$(qsub {outFileOption} {errFileOption} {extraQSubArgs} {dependantIndex} -N {jobNm} bash {batchscript} | awk \'{{print $3}}\')\n'.format( jobNm=jobname, outFileOption=stdoutFile, errFileOption=stderrFile,