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Dataset for nilearn tutorial #32
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Let's use ds000001 @yibeichan |
sounds good! I can experiment with 5 subs first |
hello @htwangtw @effigies , this dataset has 3 runs for each subject, since our goal is a 2-level glm. We have two choices:
I prefer the first solution, because the second one sounds like a three-level glm. |
2 is the correct way and how the data was analysed in the original paper! I don't think it's a bad thing to make it three-level. I would suggest to have a look at the original paper. |
Yes, the original paper used FSL, so they did three-level GLM. |
It's okay to concatenate runs but you will have to make sure the signal are normalised, so they are comparing with the same baseline. The safest way is to do each run separately, and then combine the statistical maps across run. |
Ah I see, I'll go for option 2 then, much safer. Thank you! |
Currently we are directly converting the nilearn examples directly using
nilearn.datasets
It would be good to expand it to a full analysis.
We will need to find a preprocessed dataset on task-fMRI for this.
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