diff --git a/lib/alpn-boot-8.1.3.v20150130.jar b/lib/alpn-boot-8.1.3.v20150130.jar
deleted file mode 100644
index 624b03b..0000000
Binary files a/lib/alpn-boot-8.1.3.v20150130.jar and /dev/null differ
diff --git a/lib/alpn-boot-8.1.7.v20160121.jar b/lib/alpn-boot-8.1.7.v20160121.jar
new file mode 100644
index 0000000..16ce81a
Binary files /dev/null and b/lib/alpn-boot-8.1.7.v20160121.jar differ
diff --git a/pom.xml b/pom.xml
index e6f68c6..3215f38 100644
--- a/pom.xml
+++ b/pom.xml
@@ -8,7 +8,7 @@
com.google.cloud.genomics
google-genomics-dataflow
jar
- v1beta2-0.21-SNAPSHOT
+ v1beta2-0.22-SNAPSHOT
Google
@@ -127,7 +127,7 @@
com.google.cloud.genomics
google-genomics-utils
- v1beta2-0.42
+ v1beta2-0.43
@@ -248,7 +248,7 @@
[1.8, 1.9)
- ${basedir}/lib/alpn-boot-8.1.3.v20150130.jar
+ ${basedir}/lib/alpn-boot-8.1.7.v20160121.jar
diff --git a/src/test/java/com/google/cloud/genomics/dataflow/pipelines/VariantSimilarityITCase.java b/src/test/java/com/google/cloud/genomics/dataflow/pipelines/VariantSimilarityITCase.java
index b5faaa1..84b0cca 100644
--- a/src/test/java/com/google/cloud/genomics/dataflow/pipelines/VariantSimilarityITCase.java
+++ b/src/test/java/com/google/cloud/genomics/dataflow/pipelines/VariantSimilarityITCase.java
@@ -40,15 +40,15 @@
* - a Google Cloud project name in TEST_PROJECT,
* - a Cloud Storage folder path in TEST_OUTPUT_GCS_FOLDER to store temporary test outputs,
* - a Cloud Storage folder path in TEST_STAGING_GCS_FOLDER to store temporary files,
- *
+ *
* Cloud Storage folder paths should be of the form "gs://bucket/folder/"
*
* When doing e.g. mvn install, you can skip integration tests using:
* mvn install -DskipITs
*
* To run one test:
- * mvn -Dit.test=VariantSimilarityITCase#testLocal verify
- *
+ * mvn -Dit.test=VariantSimilarityITCase#testStreamingLocal verify
+ *
* See also http://maven.apache.org/surefire/maven-failsafe-plugin/examples/single-test.html
*/
public class VariantSimilarityITCase {
@@ -72,10 +72,10 @@ public class VariantSimilarityITCase {
new GraphResult("NA12892", -7.64, 2.1),
new GraphResult("NA12893", 5.18, -1.18)
};
-
+
static String outputPrefix;
static IntegrationTestHelper helper;
-
+
@BeforeClass
public static void setUpBeforeClass() throws Exception {
helper = new IntegrationTestHelper();
@@ -138,11 +138,11 @@ public void testStreamingCloud() throws IOException, GeneralSecurityException {
};
testBase(ARGS);
}
-
+
private void testBase(String[] ARGS) throws IOException, GeneralSecurityException {
// Run the pipeline.
VariantSimilarity.main(ARGS);
-
+
// Download the pipeline results.
List results = Lists.newArrayList();
for (GcsPath path : helper.gcsUtil.expand(GcsPath.fromUri(outputPrefix + "*"))) {
@@ -154,7 +154,7 @@ private void testBase(String[] ARGS) throws IOException, GeneralSecurityExceptio
// Check the pipeline results.
assertEquals(helper.PLATINUM_GENOMES_NUMBER_OF_SAMPLES, results.size());
-
+
assertThat(results,
CoreMatchers.allOf(CoreMatchers.hasItems(EXPECTED_RESULT)));
}