diff --git a/lib/alpn-boot-8.1.3.v20150130.jar b/lib/alpn-boot-8.1.3.v20150130.jar deleted file mode 100644 index 624b03b..0000000 Binary files a/lib/alpn-boot-8.1.3.v20150130.jar and /dev/null differ diff --git a/lib/alpn-boot-8.1.7.v20160121.jar b/lib/alpn-boot-8.1.7.v20160121.jar new file mode 100644 index 0000000..16ce81a Binary files /dev/null and b/lib/alpn-boot-8.1.7.v20160121.jar differ diff --git a/pom.xml b/pom.xml index e6f68c6..3215f38 100644 --- a/pom.xml +++ b/pom.xml @@ -8,7 +8,7 @@ com.google.cloud.genomics google-genomics-dataflow jar - v1beta2-0.21-SNAPSHOT + v1beta2-0.22-SNAPSHOT Google @@ -127,7 +127,7 @@ com.google.cloud.genomics google-genomics-utils - v1beta2-0.42 + v1beta2-0.43 @@ -248,7 +248,7 @@ [1.8, 1.9) - ${basedir}/lib/alpn-boot-8.1.3.v20150130.jar + ${basedir}/lib/alpn-boot-8.1.7.v20160121.jar diff --git a/src/test/java/com/google/cloud/genomics/dataflow/pipelines/VariantSimilarityITCase.java b/src/test/java/com/google/cloud/genomics/dataflow/pipelines/VariantSimilarityITCase.java index b5faaa1..84b0cca 100644 --- a/src/test/java/com/google/cloud/genomics/dataflow/pipelines/VariantSimilarityITCase.java +++ b/src/test/java/com/google/cloud/genomics/dataflow/pipelines/VariantSimilarityITCase.java @@ -40,15 +40,15 @@ * - a Google Cloud project name in TEST_PROJECT, * - a Cloud Storage folder path in TEST_OUTPUT_GCS_FOLDER to store temporary test outputs, * - a Cloud Storage folder path in TEST_STAGING_GCS_FOLDER to store temporary files, - * + * * Cloud Storage folder paths should be of the form "gs://bucket/folder/" * * When doing e.g. mvn install, you can skip integration tests using: * mvn install -DskipITs * * To run one test: - * mvn -Dit.test=VariantSimilarityITCase#testLocal verify - * + * mvn -Dit.test=VariantSimilarityITCase#testStreamingLocal verify + * * See also http://maven.apache.org/surefire/maven-failsafe-plugin/examples/single-test.html */ public class VariantSimilarityITCase { @@ -72,10 +72,10 @@ public class VariantSimilarityITCase { new GraphResult("NA12892", -7.64, 2.1), new GraphResult("NA12893", 5.18, -1.18) }; - + static String outputPrefix; static IntegrationTestHelper helper; - + @BeforeClass public static void setUpBeforeClass() throws Exception { helper = new IntegrationTestHelper(); @@ -138,11 +138,11 @@ public void testStreamingCloud() throws IOException, GeneralSecurityException { }; testBase(ARGS); } - + private void testBase(String[] ARGS) throws IOException, GeneralSecurityException { // Run the pipeline. VariantSimilarity.main(ARGS); - + // Download the pipeline results. List results = Lists.newArrayList(); for (GcsPath path : helper.gcsUtil.expand(GcsPath.fromUri(outputPrefix + "*"))) { @@ -154,7 +154,7 @@ private void testBase(String[] ARGS) throws IOException, GeneralSecurityExceptio // Check the pipeline results. assertEquals(helper.PLATINUM_GENOMES_NUMBER_OF_SAMPLES, results.size()); - + assertThat(results, CoreMatchers.allOf(CoreMatchers.hasItems(EXPECTED_RESULT))); }