From 8bea5698f5f1c6bfb4393e361dee2404f0daae11 Mon Sep 17 00:00:00 2001 From: njlyon0 Date: Wed, 12 Jun 2024 16:20:13 -0400 Subject: [PATCH] Adding `ordination` to README (replacing `nms_ord` and `pcoa_ord`) --- README.Rmd | 4 +--- README.md | 11 ++++------- 2 files changed, 5 insertions(+), 10 deletions(-) diff --git a/README.Rmd b/README.Rmd index 8148a2a..629a9fe 100644 --- a/README.Rmd +++ b/README.Rmd @@ -58,9 +58,7 @@ devtools::install_github("njlyon0/supportR") - **`theme_lyon`**: Applies a set of modifications to the non-data aspects of a `ggplot2` plot to ensure a consistent "feel" of a set of plots -- **`nms_ord`**: Creates a Non-Metric Multi-Dimensional Scaling (NMS) ordination with base R. Requires the dissimilarity matrix returned by `vegan::metaMDS` - -- **`pcoa_ord`**: Creates a Principal Coordinates Analysis (PCoA) ordination with base R. Requires the distance matrix returned by `ape::pcoa` +- **`ordination`**: Creates an ordination for either the nonmetric multidimensional scaling (NMS) dissimilarity matrix created by `vegan::metaMDS` or for the principal coordinates analysis (PCoA) distance matrix returned by `ape::pcoa` ### Operations Outside of R diff --git a/README.md b/README.md index 8bbc4c1..9fb4a51 100644 --- a/README.md +++ b/README.md @@ -82,13 +82,10 @@ devtools::install_github("njlyon0/supportR") aspects of a `ggplot2` plot to ensure a consistent “feel” of a set of plots -- **`nms_ord`**: Creates a Non-Metric Multi-Dimensional Scaling (NMS) - ordination with base R. Requires the dissimilarity matrix returned by - `vegan::metaMDS` - -- **`pcoa_ord`**: Creates a Principal Coordinates Analysis (PCoA) - ordination with base R. Requires the distance matrix returned by - `ape::pcoa` +- **`ordination`**: Creates an ordination for either the nonmetric + multidimensional scaling (NMS) dissimilarity matrix created by + `vegan::metaMDS` or for the principal coordinates analysis (PCoA) + distance matrix returned by `ape::pcoa` ### Operations Outside of R