This repository contains the source code for a 1D Simulation of DNA replication as well as a 3D chromatin simulation using a random loop DNA model. The simulations can be performed online at http://sim.bio.tu-darmstadt.de/.
The instructions for each application can be found in the subdirectories.
Löb, D. et al. 3D replicon distributions arise from stochastic initiation and domino-like DNA replication progression. Nat. Commun. 7:11207 doi: 10.1038/ncomms11207 (2016).
This application is released under the GPL License version 3.