From 44739ecf922bc78cc6c765ee3d9715fe3a905b76 Mon Sep 17 00:00:00 2001 From: "Matthew L. Fidler" Date: Mon, 26 Jun 2023 20:35:58 +0200 Subject: [PATCH] Update readme --- README.Rmd | 3 ++- README.md | 9 ++++----- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/README.Rmd b/README.Rmd index 1b6b9d2f..cb41214f 100644 --- a/README.Rmd +++ b/README.Rmd @@ -46,7 +46,8 @@ install.packages('nonmem2rx') ## What you can do with `nonmem2rx`/`babelmixr2` -[![nonmem2rx-flowchart](https://github.com/nlmixr2/nonmem2rx/assets/514778/803feb11-f2d9-4a5e-af08-834d9541ac11)](https://www.page-meeting.org/default.asp?abstract=10313) +![nonmem2rx-flowchart](https://github.com/nlmixr2/nonmem2rx/assets/514778/803feb11-f2d9-4a5e-af08-834d9541ac11) + You can do many useful tasks directly converting between nlmixr2 and NONMEM models; you can: diff --git a/README.md b/README.md index 25ae0e8b..ea308f4e 100644 --- a/README.md +++ b/README.md @@ -39,8 +39,7 @@ install.packages('nonmem2rx') ## What you can do with `nonmem2rx`/`babelmixr2` -[![PAGE -flowchart](https://www.page-meeting.org/default.asp?abstract=10313)](https://raw.githubusercontent.com/nlmixr2/nonmem2rx/main/nonmem2rx-flowchart.png) +![nonmem2rx-flowchart](https://github.com/nlmixr2/nonmem2rx/assets/514778/803feb11-f2d9-4a5e-af08-834d9541ac11) You can do many useful tasks directly converting between nlmixr2 and NONMEM models; you can: @@ -118,7 +117,7 @@ ctlFile <- system.file("mods/cpt/runODE032.ctl", package="nonmem2rx") # You can use a control stream or other file. With the development # version of `babelmixr2`, you can simply point to the listing file mod <- nonmem2rx(ctlFile, lst=".res", save=FALSE) -#> ℹ getting information from '/tmp/RtmpQuLnZm/temp_libpathad52294b5c7b/nonmem2rx/mods/cpt/runODE032.ctl' +#> ℹ getting information from '/tmp/RtmphCfr0E/temp_libpathaf275a605b00/nonmem2rx/mods/cpt/runODE032.ctl' #> ℹ reading in xml file #> ℹ done #> ℹ reading in phi file @@ -154,7 +153,7 @@ mod <- nonmem2rx(ctlFile, lst=".res", save=FALSE) #> ℹ change initial estimate of `eta2` to `0.0993872449483344` #> ℹ change initial estimate of `eta3` to `0.101302674763154` #> ℹ change initial estimate of `eta4` to `0.0730497519364148` -#> ℹ read in nonmem input data (for model validation): /tmp/RtmpQuLnZm/temp_libpathad52294b5c7b/nonmem2rx/mods/cpt/Bolus_2CPT.csv +#> ℹ read in nonmem input data (for model validation): /tmp/RtmphCfr0E/temp_libpathaf275a605b00/nonmem2rx/mods/cpt/Bolus_2CPT.csv #> ℹ ignoring lines that begin with a letter (IGNORE=@)' #> ℹ applying names specified by $INPUT #> ℹ subsetting accept/ignore filters code: .data[-which((.data$SD == 0)),] @@ -167,7 +166,7 @@ mod <- nonmem2rx(ctlFile, lst=".res", save=FALSE) #> /usr/share/R/include/R_ext/Complex.h:80:6: warning: ISO C99 doesn’t support unnamed structs/unions [-Wpedantic] #> 80 | }; #> | ^ -#> ℹ read in nonmem IPRED data (for model validation): /tmp/RtmpQuLnZm/temp_libpathad52294b5c7b/nonmem2rx/mods/cpt/runODE032.csv +#> ℹ read in nonmem IPRED data (for model validation): /tmp/RtmphCfr0E/temp_libpathaf275a605b00/nonmem2rx/mods/cpt/runODE032.csv #> ℹ done #> ℹ changing most variables to lower case #> ℹ done