diff --git a/README.md b/README.md index 4e04c8bb..f17a5e2b 100644 --- a/README.md +++ b/README.md @@ -28,9 +28,9 @@ Download the latest compiled versions from [Github Releases](https://github.com/ ## How can I learn how to use Stock Synthesis? -To learn more about how to use Stock Synthesis, see the [getting started guide with Stock Synthesis guide](https://nmfs-stock-synthesis.github.io/ss-documentation/Getting_Started_SS.html). To learn how to build your own models in Stock Synthesis, see the [Develop an Stock Synthesis model guide](https://nmfs-stock-synthesis.github.io/ss-documentation/ss_model_tips.html). +To learn more about how to use Stock Synthesis, see the [getting started guide with Stock Synthesis guide](https://nmfs-stock-synthesis.github.io/doc/Getting_Started_SS.html). To learn how to build your own models in Stock Synthesis, see the [Develop an Stock Synthesis model guide](https://nmfs-stock-synthesis.github.io/doc/ss_model_tips.html). -The [Stock Synthesis user manual](https://github.com/nmfs-stock-synthesis/ss-documentation/releases) provides the complete documentation of Stock Synthesis, while the [helper spreadsheets](https://github.com/nmfs-stock-synthesis/ss-documentation/tree/main/Helper_Spreadsheets) are useful cheatsheets that outline inputs necessary for options that are widely used within Stock Synthesis. +The [Stock Synthesis user manual](https://nmfs-stock-synthesis.github.io/doc/SS330_User_Manual.html) provides the complete documentation of Stock Synthesis. ## How do I ask questions about Stock Synthesis? @@ -50,6 +50,7 @@ As Stock Synthesis usage has grown, so has the number of tools to work with it. - [ss3diags](https://github.com/PIFSCstockassessments/ss3diags): Run advanced diagnostics for Stock Synthesis models. - [ss3sim](https://github.com/ss3sim/ss3sim): Conduct simulation studies using Stock Synthesis. - [SSI](https://vlab.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view/5042951): Stock Synthesis Interface, a GUI for developing models and running Stock Synthesis. Links to r4ss. +- [SS3 Shiny helper app](https://connect.fisheries.noaa.gov/ss3-helper/): Visualize common selectivity pattern options available within Stock Synthesis. - [SSMSE](https://github.com/nmfs-fish-tools/SSMSE): Use Stock Synthesis operating models in Management Strategy Evaluation. - [sa4ss](https://github.com/nwfsc-assess/sa4ss): Create accessible R markdown stock assessment documents with results from Stock Synthesis models. Note this tool is intended for use by analysts within the Northwest and Southwest Fisheries Science Centers currently. - Data limited tools - Options included Simple Stock Synthesis ([SSS](https://github.com/shcaba/SSS)) and Extended Simple Stock Synthesis ([XSSS](https://github.com/chantelwetzel-noaa/XSSS)), as well as [SS-DL-tool](https://github.com/shcaba/SS-DL-tool), a shiny app that includes XSSS and SSS in its functionality.