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Karius
- Goleta, California
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seqspace Public
Library to normalize scRNAseq expression data and learn its underlying geometric structure
Julia
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neherlab/pangraph Public
A bioinformatic toolkit to align genome assemblies into pangenome graphs
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neherlab/covid19_scenarios Public
Models of COVID-19 outbreak trajectories and hospital demand
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tissueAnalysisSuite Public
A complete set of MATLAB code to segment live-image movies of developing epithelial tissues, track cellular flows, and infer intercellular stresses.
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vertexModelSimulation Public
Simulates a growing, dividing epithelial tissue under the active tension network model, as well as under finite pressure differentials.
MATLAB 1
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neherlab/covid19_scenarios_data Public archive
Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project