This repository provides access to the data and source code used for the manuscript
Nobuaki Mizumoto, Simon Hellemans, Michael S Engel, Thomas Bourguignon, Aleš Buček
Preprint is available at bioRxiv.
Zenodo link:
- README
- scripts
- Preprocess.R - run before Output.R
- Output.R - output all results (figures, statistics, tables)
- data_conversion.py - convert data from SLEAP for R (use before Preprocess.R)
- img - all outputs are stored
- data
- Cf-control - Coordinates generated by UMATracker (control)
- Cf-control-sleap - Coordinates generated by SLEAP (control)
- Cf-sticky - Coordinates generated by UMATracker (sticky)
- Cf-sticky-DLC - Coordinates generated by DLC (sticky)
- Fossil - data extracted from amber CT-scan
- bodysize_measurement - body length measurement
R version 4.3.1 (2023-06-16 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C LC_TIME=English_United States.utf8
time zone: America/Chicago
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] reticulate_1.30 dlcpr_0.1.0 stringr_1.5.0 data.table_1.14.8 extrafont_0.19
[6] car_3.1-2 carData_3.0-5 coxme_2.2-18.1 bdsmatrix_1.3-6 survival_3.5-5
[11] survminer_0.4.9 ggpubr_0.6.0 exactRankTests_0.8-35 MASS_7.3-60 viridis_0.6.2
[16] viridisLite_0.4.1 ggplot2_3.4.4
loaded via a namespace (and not attached):
[1] gtable_0.3.3 xfun_0.39 rstatix_0.7.2 lattice_0.21-8 vctrs_0.6.4 tools_4.3.1
[7] generics_0.1.3 tibble_3.2.1 fansi_1.0.4 pkgconfig_2.0.3 Matrix_1.5-4.1 lifecycle_1.0.3
[13] compiler_4.3.1 farver_2.1.1 textshaping_0.3.6 munsell_0.5.0 Rttf2pt1_1.3.12 pillar_1.9.0
[19] crayon_1.5.2 extrafontdb_1.0 tidyr_1.3.0 abind_1.4-5 nlme_3.1-162 km.ci_0.5-6
[25] tidyselect_1.2.0 stringi_1.7.12 dplyr_1.1.4 purrr_1.0.1 labeling_0.4.2 splines_4.3.1
[31] grid_4.3.1 colorspace_2.1-0 cli_3.6.1 magrittr_2.0.3 utf8_1.2.3 broom_1.0.4
[37] withr_2.5.0 scales_1.2.1 backports_1.4.1 gridExtra_2.3 ggsignif_0.6.4 png_0.1-8
[43] ragg_1.2.5 zoo_1.8-12 knitr_1.42 KMsurv_0.1-5 survMisc_0.5.6 rlang_1.1.0
[49] Rcpp_1.0.10 isoband_0.2.7 xtable_1.8-4 glue_1.6.2 jsonlite_1.8.4 rstudioapi_0.14
[55] R6_2.5.1 systemfonts_1.0.4