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@nolanlab

Garry P. Nolan Laboratory

Pinned repositories

  1. Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation

    Java 7 3

  2. Run CODEX apps on the web: driftcompensation, deconvolution, segmentation, clustering and viewing

    Java 1

  3. Project to deploy the CODEX server on the left and right computers in the nolan lab.

    Java

  4. VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:

    Java 23 3

  5. An ImageJ plugin to view and analyze CODEX images from the CODEXToolkit.

    Java

  • Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation

    Java 7 3 Updated Apr 24, 2019
  • Trims the codex stacks leaving a specified number of slices around the given plane

    Java Updated Apr 18, 2019
  • Accessory algorithms and data structures for multivariate single-cell analysis. VorteX and CODEX projects use this library

    Java Updated Mar 29, 2019
  • Comprehensive comparison of dimensionality reduction data for single-cell data

    R 1 Updated Oct 18, 2018
  • scaffold

    R 15 8 Updated Aug 13, 2018
  • VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:

    Java 23 3 MIT Updated Jul 10, 2018
  • Project to deploy the CODEX server on the left and right computers in the nolan lab.

    Java Updated Jul 9, 2018
  • deconvolution of barcoded CyTOF data

    MATLAB 5 11 GPL-3.0 Updated May 26, 2018
  • bead-based normalization of mass cytometry data

    MATLAB 9 3 GPL-3.0 Updated May 26, 2018
  • Run CODEX apps on the web: driftcompensation, deconvolution, segmentation, clustering and viewing

    Java 1 LGPL-3.0 Updated May 23, 2018
  • SNAIL paper data

    Updated Apr 27, 2018
  • An ImageJ plugin to view and analyze CODEX images from the CODEXToolkit.

    Java Updated Mar 13, 2018
  • Scale-invariant debarcoding algorithm for CyTOF data

    Java Updated Jan 9, 2018
  • Java Updated Sep 12, 2017
  • The SCONE algorithm

    Updated May 16, 2017
  • A tool to design probes for the PLAYR technology

    JavaScript 2 2 Updated May 3, 2017
  • Citrus Development Code

    R 27 20 GPL-3.0 Updated Oct 17, 2016
  • SPADE: Spanning Tree Progression of Density Normalized Events

    R 37 18 Updated Aug 23, 2016
  • Memory efficient clustering in R for large datasets

    C++ 14 5 Updated Jun 29, 2016
  • R package for working with CyToF data

    R 15 11 Updated May 10, 2016
  • Script for backing up CyTOF data to Google cloud storage

    Python 2 Updated Feb 12, 2016
  • A reference map of the mouse Immune System

    R 1 1 Updated Jul 30, 2015
  • Cytoscape plugin for SPADE

    Java 8 7 Updated May 4, 2015
  • VWorks plugin for Q.Instruments Bioshake

    Visual Basic Updated Apr 14, 2015
  • various scripts and functions that can be useful when working with mass (or flow) cytometry data in Matlab

    MATLAB 4 2 GPL-3.0 Updated Feb 4, 2015
  • VWorks plugin for controlling BioTek liquid handlers

    Visual Basic Updated Jan 22, 2015

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