Skip to content

Releases: nolanlab/CODEX

CODEXSetup

22 Sep 20:58
Compare
Choose a tag to compare
  1. Set HandE scaling to false in Driffta
  2. Modify exposure times map value while populating

CODEXSetup

24 Jul 20:39
065c4de
Compare
Choose a tag to compare

---Release notes----

  1. Added support for standalone processing of HandE data alone

CODEXSetup

09 Jul 19:52
8ba0e77
Compare
Choose a tag to compare

----RELEASE NOTES---

  1. Fixed stretching issues with uploader UI screen. The region names field has a limited columns for UI.
  2. Code refactoring fixing some bugs and performance improvements.

CODEXSetup

13 May 19:53
eab1842
Compare
Choose a tag to compare

----RELEASE NOTES---

  1. Added a new feature to provide support for TMA with multiple region and multiple tiles within each region.
  2. Fixed some stretching issues in GUI for select fields.

CODEXSetup

12 Feb 09:08
e9375de
Compare
Choose a tag to compare

----RELEASE NOTES---

  1. Fixed issues with 1zslice drift compensation
  2. Fixed tile overlap percentage and allows value 0 to be entered for TMA with bleach minimizing
  3. Fixed minor bugs and defects
  4. Removed tile width and height field from optional parameters list

CODEXSetup

05 Feb 02:36
64e2504
Compare
Choose a tag to compare

----RELEASE NOTES----

  1. Implemented TMA multipoint single region feature support for processing the data in the uploader.
  2. Exposure times file now supports both tab and comma separated spaces for background subtraction
  3. Updated POM for microvolution jar. Using akoya_2019.03 version now.
  4. Fixed drift compensation error when experiment had only 1 z-slice.

CODEXSetup

16 Jan 00:15
4f034b5
Compare
Choose a tag to compare
  1. Redesigned the whole uploader UI.
  2. Added field level validations.
  3. Checks if microvolution license is present, if so automatically enables it while processing.
  4. Provided ability to view all the files like input, output, json, txt files etc. from within the application.

CODEXSetup

21 Oct 18:17
ea403e0
Compare
Choose a tag to compare
  1. Introduced a new field to specify processing of a region and tile correspondingly.
  2. To process all regions and all tiles which is the default, leave both these fields blank.
  3. Removed unused exe file and vortex JAR to reduce size of installer.

CODEXSetup

21 Aug 21:55
ba0a0db
Compare
Choose a tag to compare
  1. Implement processing of select tiles based on value specified in a field in optional details panel
  2. Can specifiy range of values using - or a single tile number separated by ; delimiter or both
  3. Montage will be created accordingly, if a particular tile was not processed previously, a blank tile will be used in montage.

CODEXSetup

19 Aug 23:34
82676c9
Compare
Choose a tag to compare
  1. Fixed a couple of bugs while loading exp.json when the fields deconvoIterations and psf model is not present
  2. Added tile number for preprocessed stitched image at top left for every tile