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R Attempting to explicitly handle NA's in FCS parameter descriptions. Oct 5, 2016
inst Changing language relating to employeed statistical models. Nov 10, 2014
m4 Adding openmp configure files to enable multithreaded event mapping May 13, 2013
man Updating naming convention for continuous model Oct 31, 2014
src Moving to configure-less install Oct 11, 2013
.gitignore
DESCRIPTION
License.txt Changing License to GPL 3 Jun 4, 2014
NAMESPACE Merge branch 'master' into continuousModel Aug 15, 2014
README.mediawiki Update README.mediawiki Jun 12, 2014
citrus.Rproj First steps of refactoring underlying cross validation code. May 28, 2014
cleanup Moving to configure-less install Oct 11, 2013
configure.ac Fixing conf and makevars Oct 10, 2013

README.mediawiki

Citrus Readme

Citrus is a package for identifying clusters of cells in multidimensional flow cytometry data associated with an experimental or clincal endpoint of interest.

Getting Started

Version History

Version 0.08
- Completely refactored codebase that is hopefully much more intuitive.
- Documentation added.
Version 0.07
- Multiclass analysis available for SAM and Nearest Shrunken Centroid models
- Small GUI enhancements
Version 0.06
- Changed feature names
- Many new graphical outputs for result visualization
Version 0.05
- Adding support for SAM (two-class only)
Version 0.04
- Adding support for Survival analysis (glmnet model only)
Version 0.03
- Switching to ggplot2 and adding feature heiarachy plots
Version 0.02
- Now includes shiny web GUI for running citrus
Version 0.01
- Initial Citrus Test Code
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