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SPADE availability for Cytoscape 3 #118
We no longer support the plugin for any version of Cytoscape since Cytobank provides a complete interface. We made an attempt in January to support Cytoscape 3.0, but we could not find some of the equivalent APIs. The progress we made is here: https://github.com/nolanlab/cytospade/tree/cytoscape-3. We also started working on a Gephi plugin, https://github.com/nolanlab/cytospade/tree/Gephi.
(Looking at that repository now, I realize the commit history is messed up for the master branch. If you want to work on it, let me know and I'll repair the repository.) Thanks!