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SPADE availability for Cytoscape 3 #118

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srikanthBezawada opened this issue Oct 16, 2015 · 4 comments
Closed

SPADE availability for Cytoscape 3 #118

srikanthBezawada opened this issue Oct 16, 2015 · 4 comments

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@srikanthBezawada
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@srikanthBezawada srikanthBezawada commented Oct 16, 2015

Hello,

Is SPADE app available for Cytoscape 3.0 ? I am interested in porting it to support for Cytoscape 3.0 as a Cytoscape app

Thanks,
Srikanth.

@zbjornson

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@zbjornson zbjornson commented Oct 16, 2015

We no longer support the plugin for any version of Cytoscape since Cytobank provides a complete interface. We made an attempt in January to support Cytoscape 3.0, but we could not find some of the equivalent APIs. The progress we made is here: https://github.com/nolanlab/cytospade/tree/cytoscape-3. We also started working on a Gephi plugin, https://github.com/nolanlab/cytospade/tree/Gephi.

(Looking at that repository now, I realize the commit history is messed up for the master branch. If you want to work on it, let me know and I'll repair the repository.) Thanks!

@srikanthBezawada

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@srikanthBezawada srikanthBezawada commented Oct 18, 2015

Hi Zach Bjornson,

Thanks for the quick reply. I recently worked on SpanningTree app for Cytoscape3, tiedie app, adj app

I am interested in porting & developing Spade app for Cytoscape3. But I would need someone to mentor me. Let me know.

@zbjornson

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@zbjornson zbjornson commented Oct 26, 2015

Sorry for the delay. We unfortunately don't have a ton of resources to invest in continuing development of the Cytoscape plugin, but if you want to fork the repository I can try to help where I can. Your interest is appreciated!

@srikanthBezawada

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@srikanthBezawada srikanthBezawada commented Oct 27, 2015

I shall get back to you once I can work on the 3.0 version, meanwhile you can repair the repository. Thanks!

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