@nrnb

National Resource for Network Biology

Open source code repositories supported by the NRNB

  • website code for the national resource for network biology

    HTML 9 Updated Jul 23, 2017
  • GSoC 2012 project for Cytoscape. The app works for Cytoscape 3.0 onward.

    Java 2 Updated Apr 29, 2017
  • Collection of resources for network biology training

    Updated Apr 17, 2017
  • Find pathways at WikiPathways that contain one or more miRNAs

    HTML 1 Updated Mar 25, 2017
  • Main documentation site for NRNB GSoC project ideas and resources

    17 7 Updated Jan 18, 2017
  • Find interactions between nodes and extract subgraphs from an XGMML network

    Python 1 1 Updated Dec 21, 2016
  • code from GSoC 2016 by Supun Arunoda (Scooter Morris) and NRNB Academy Summer Session 2015 by Vijay Dhameliya (Scooter Morris)

    Java 7 Updated Sep 10, 2016
  • JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.

    Java 6 Updated Sep 9, 2016
  • Parse CellDesigner annotations from SBML.

    Java 2 Updated Sep 8, 2016
  • Design Explorer and Viewer for Iterative SBML Enhancement of Representations

    C++ 2 Updated Sep 7, 2016
  • PHP 2 Updated Sep 5, 2016
  • EscherConverter is a standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

    Java 5 Updated Aug 28, 2016
  • JavaScript 17 Updated Aug 25, 2016
  • Cytoscape.js tutorials project for GSOC 2016

    JavaScript 3 Updated Aug 24, 2016
  • gsoc project to enhance vignettes in R package RCy3 for use with Cytoscape

    R 2 Updated Aug 23, 2016
  • JavaScript 1 Updated Aug 23, 2016
  • An interactive graphical editing / curation tool for cancer pathways

    JavaScript 7 Updated Aug 23, 2016
  • The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.

    JavaScript 14 Updated Aug 23, 2016
  • JavaScript 11 Updated Aug 22, 2016
  • Core App: Command Dialog

    Java 2 Updated Aug 22, 2016
  • JavaScript 8 Updated Aug 19, 2016
  • JavaScript 2 Updated Aug 15, 2016
  • Google Summer of Code 2016 Project for NRNB

    Java 1 Updated Aug 14, 2016
  • JavaScript 3 Updated Aug 13, 2016
  • A Cytoscape.js extension for the k-means, k-medoids, & fuzzy c-means family of algorithms

    JavaScript 2 Updated Aug 8, 2016
  • code from NRNB Academy Summer Session 2015 by Sakahi Pratap (Giovanni Scardoni)

    Java Updated Sep 1, 2015
  • code from NRNB Academy Summer Session 2015 by Matthias Koenig (Andreas Dräger)

    Java 2 2 Updated Aug 27, 2015
  • code from NRNB Academy Summer Session 2015 by Metin Can Siper (Ugur Dogrusoz)

    JavaScript 1 7 Updated Aug 21, 2015
  • Updated Mar 17, 2015
  • Java Updated Mar 17, 2015