the computational tool described in http://bioinformatics.oxfordjournals.org/content/28/9/1287
1 System Requirements
GRiP (Gene Regulation in Prokaryotes) is an asynchronous, event driven, hybrid model of the facilitated diffusion mechanism in prokaryotic systems. This software is implemented in Sun Java 1.6, which makes it widely available. The system requirements are
- Java Runtime Environment 1.6
- At least 3GB free RAM
The application, uses in most cases less than 2GB of RAM, but we preallocate more to cover any unexpected case. The user has the possibility to change this, when calling the .jar files (see below).
read README.pdf for the manual and examples.